Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq810 152 5e-32 seq2305 122 8e-23 seq775 111 1e-19 seq4707 86.0 6e-12 seq6389 84.2 2e-11 >seq810 Length=26514 Score = 152 bits (168), Expect = 5e-32 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || ||||||| ||| |||||||| ||||||||||| || | ||||| | Sbjct 7730 CGTAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTAAGTGTACGTCCA 7671 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||| | | |||| ||||| ||||||||||| || || |||||||| Sbjct 7670 TCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 7611 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| |||||||| | | ||| | |||||| | || || || || | || | Sbjct 7610 TCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACATCAAGGGTGATG 7551 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125 ||||||||||||| |||||||| |||||| ||||||| Sbjct 7550 GTTTTACCAGTCAAAGTTTTTACGAAAATTTGCATGA 7514 >seq2305 Length=8964 Score = 122 bits (134), Expect = 8e-23 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||| ||||| | ||| ||||||||||| |||||||| || | |||||| |||| Sbjct 1529 AAAACTAAATGCAATGTTGCTTCTTTTTGAATATTGTAGTCACTAAGTGTACGCCCATCT 1470 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | ||||| || | | | || | ||| ||||||||||| || || ||||||||||| Sbjct 1469 TCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTATCT 1410 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 ||||||||||| | | ||| | |||||| | ||| || || || | ||| | ||| Sbjct 1409 TGTATTTTTTGTTTAACGTTTTCAATAGTATCAGACGGTTCTACATCAAGCGTGATGGTT 1350 Query 132092 TTACCAGTCA 132101 || ||||||| Sbjct 1349 TTCCCAGTCA 1340 >seq775 Length=28483 Score = 111 bits (122), Expect = 1e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| | |||||||| | | |||| ||||| ||||||||||| || || |||||||| Sbjct 10619 ATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTT 10560 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || |||||||| | | ||| | |||||| | || || || || | || | Sbjct 10559 GTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTGAT 10500 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATT 132131 ||||||||||||| ||||||| |||||| ||||||| | ||| Sbjct 10499 GGTTTTACCAGTCAATGTTTTTACGAAAATTTGCATGATTAATT 10456 >seq4707 Length=625 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| || ||||| || ||||| | | ||| |||||||| || || || || | || Sbjct 397 ACGTAAACGCAATACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCAGAAAGAGT 338 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| | |||||||| | | |||| ||||| |||||||||||||| || || Sbjct 337 ACGTCCATCTTCCAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATTCC 278 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTG 132051 |||||| || || ||||| || | ||| Sbjct 277 TTCTTTGTCTTGGATCTTTTGCTTGACCTG 248 >seq6389 Length=961 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGG 131960 ||| || |||||||| ||||| | | || ||||||||||| || || || ||| || | Sbjct 18 ACGTAAACGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCTAAT-G 76 Query 131961 TACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020 |||| |||||| | |||||||| | | || | || ||||| ||||| || || | Sbjct 77 TACGTCCATCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGGAATCC 136 Query 132021 CTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 |||||||||| || |||||||||| | | |||||| | | ||| || | Sbjct 137 CTTCTTTATCTTGGATCTTTTGTTTCACACGCGAAATGGTATCGCTTGCCTCTGTATCTA 196 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTA 132110 || | ||||| ||||| | |||||||| Sbjct 197 GAGTAATTGTTTTTCCAGTTAAAGTTTTTA 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476556711424560