Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2305 113 4e-20 seq810 109 5e-19 seq6389 95.1 1e-14 seq775 82.4 7e-11 >seq2305 Length=8964 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 25193 ACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTA 25252 ||||| || || ||| | |||||| | || || ||| | |||||||| || | || Sbjct 1336 ACATTGACTGGGAAAACCATCACGCTTGATGTAGAACCGTCTGATACTATTGAAAACGTT 1395 Query 25253 AAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGC 25312 ||||||||||| |||||||| ||||| || || ||||| ||| | | || | | Sbjct 1396 AAACAAAAAATACAAGATAAAGAAGGTATCCCACCAGATCAACAACGTTTGATATTTGCA 1455 Query 25313 GGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACC 25372 ||||||||| | ||||||| | | | || || |||||||||||||||||| | || Sbjct 1456 GGCAAACAATTGGAAGATGGGCGTACACTTAGTGACTACAATATTCAAAAAGAAGCAACA 1515 Query 25373 ATTCATTTAGTGTTAAGATT 25392 | |||||||| |||||||| Sbjct 1516 TTGCATTTAGTTTTAAGATT 1535 >seq810 Length=26514 Score = 109 bits (120), Expect = 5e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 25167 TAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCG 25226 ||| || ||||||| | || |||||||| || || || ||| | ||||| | || || | Sbjct 7508 TAATCATCATGCAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACCCTTGATGTAG 7567 Query 25227 AAGCCAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCG 25285 || ||| | |||||||| || | ||||||||||| ||| || ||||| || || || Sbjct 7568 AA-CCATCTGATACTATTGAAAACGTAAAACAAAAGATTCAAGACAAAGAAGGAATTCCA 7626 Query 25286 CCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC 25345 || ||||| ||| | || || | | || |||||| | ||||||| | | | || Sbjct 7627 CCAGATCAACAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACGTACACTTAGT 7686 Query 25346 GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 || ||||| || ||||||||| | || | |||||||| ||| Sbjct 7687 GACTACAACATCCAAAAAGAAGCAACTTTACATTTAGTATTA 7728 >seq6389 Length=961 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 25182 TGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTA 25241 ||| ||||||||| ||||| |||||| | || || | || || || | |||||| | Sbjct 232 TGTATGTAAAAACTTTAACTGGAAAAACAATTACTCTAGATACAGAGGCAAGCGATACCA 173 Query 25242 TCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGAC 25301 | || || |||||||| || |||||||| || || || || || || ||| || Sbjct 172 TTTCGCGTGTGAAACAAAAGATCCAAGATAAAGAAGGGATTCCACCAGACCAACAACGAT 113 Query 25302 TCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAATATTCAA 25360 | || | || || |||||| | ||||||| | | | ||| ||||| ||||||||| Sbjct 112 TGATATTCGCAGGTAAACAATTAGAAGATGGACGTACATT-AGCTGATTATAATATTCAA 54 Query 25361 AAAGAATCCACCATTCATTTAGTGTT 25386 |||||||| || | |||||||| || Sbjct 53 AAAGAATCTACGTTGCATTTAGTTTT 28 >seq775 Length=28483 Score = 82.4 bits (90), Expect = 7e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || ||||||||||| || || ||| | ||||| | || || ||| ||| Sbjct 10463 CATGCAAATTTTCGTAAAAACATTGACTGGTAAAACCATCACTCTTGATGTAGAA-CCAT 10521 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | |||||||| || | || |||||||| || || ||||| || || || || |||| Sbjct 10522 CTGATACTATTGAAAACGTTAAACAAAAGATCCAAGACAAAGAAGGAATTCCACCAGATC 10581 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 25331 | ||| | || || | | || |||||| | ||||||| Sbjct 10582 AACAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATG 10620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445043514582720