Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq810 138 1e-27 seq775 118 1e-21 seq2305 114 1e-20 seq4160 100 3e-16 seq6389 86.0 6e-12 >seq810 Length=26514 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || || || | |||| || | ||| ||||| ||||||||||| | | Sbjct 7742 CCTCCACGAAGACGTAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTA 7683 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | ||||| |||||||| || | ||| || ||||| || || Sbjct 7682 AGTGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGA 7623 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCAC 134665 || |||||||| |||||||| |||||||| || | | |||| || || || | ||| || Sbjct 7622 ATTCCTTCTTTGTCTTGAATCTTTTGTTTTAC-GTTTTCAATAGTATCAGATGGTTCTAC 7564 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||||||||| || |||||||| |||||||||||||| Sbjct 7563 ATCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCAT 7516 >seq775 Length=28483 Score = 118 bits (130), Expect = 1e-21 Identities = 116/147 (79%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 ||||| |||||||| || | ||| || ||||| || || || |||||||| ||||| || Sbjct 10609 TGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATC 10550 Query 134628 TTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 |||||||| || | | |||| || || || | ||| || || ||||| ||||||||||| Sbjct 10549 TTTTGTTTAAC-GTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTGATGGTTTTACC 10491 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| |||||||||||||| Sbjct 10490 AGTCAATGTTTTTACGAAAATTTGCAT 10464 >seq2305 Length=8964 Score = 114 bits (126), Expect = 1e-20 Identities = 132/175 (75%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 134522 TTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAA 134581 ||| |||||||| |||||||| | || || | || || | |||||||||||||| Sbjct 1509 TTCTTTTTGAATATTGTAGTCACTAAGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAA 1450 Query 134582 AATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGC 134641 |||||||| || ||||| || || || |||||||| ||||| ||||||||||| | || Sbjct 1449 TATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGTATTTTTTGTTT-AACGT 1391 Query 134642 GTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 | |||| || || |||| ||| || || || || |||||||| || || || || Sbjct 1390 TTTCAATAGTATCAGACGGTTCTACATCAAGCGTGATGGTTTTCCCAGTCAATGT 1336 >seq4160 Length=5066 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||| | |||||||| || ||| | || || || |||||||| ||||| ||||||||| Sbjct 1006 CCCGCATATATCAAACGTTGTTGACCTGGAGGGATACCTTCTTTATCTTGTATTTTTTGT 947 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || | | | ||| || || | ||| || || ||||| ||||||||||| |||||| Sbjct 946 TTTATATTTGCAATTGTATCAGATGGTTCTACATCAAGAGTGATGGTTTTACCAGTTAAA 887 Query 134694 GTTTTAACGAAAA 134706 |||||||| |||| Sbjct 886 GTTTTAACAAAAA 874 >seq6389 Length=961 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 ||||| || | || | ||| ||||| |||||||| || || || | | || | Sbjct 25 CGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCTAATGTACGTCCA 84 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | ||||| ||||| || ||||| || || || || || || || |||||||| Sbjct 85 TCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGGAATCCCTTCTTTA 144 Query 134619 TCTTGAATTTTTTGTTTGAC-CGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGTAA 134676 ||||| || |||||||| || |||| |||| | ||| | || || ||||||| Sbjct 145 TCTTGGATCTTTTGTTTCACACGCGA--AATGGTATCGCTTGCCTCTGTATCTAGAGTAA 202 Query 134677 TGGTTTTACCGGTTAAAGTTTTAAC 134701 | ||||| || ||||||||||| || Sbjct 203 TTGTTTTTCCAGTTAAAGTTTTTAC 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505340620327920