Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq888 434 1e-116 >seq888 Length=1579 Score = 434 bits (480), Expect = 1e-116 Identities = 516/697 (74%), Gaps = 2/697 (0%) Strand=Plus/Minus Query 162010 TAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCCTACA 162069 |||| ||||| ||||| ||||| |||||| | |||||| | || ||||| |||| Sbjct 1577 TAATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACA 1518 Query 162070 ATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCAT 162129 | || ||||||||||| | |||||||||||| || || || |||||||| |||||| Sbjct 1517 ACGCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCAC 1458 Query 162130 TGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCC 162189 | || ||||| | ||||| || || || || || || || || | ||| || | || Sbjct 1457 TTGGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTA 1398 Query 162190 TGTTGTTTCTTC-AAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTT 162248 | | ||||||| |||| ||||| |||||||| || |||| ||||| |||||||| || Sbjct 1397 TCCT-TTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTA 1339 Query 162249 GCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACA 162308 ||||| |||| || | ||||||||| | ||| |||||||| | ||||| ||||| ||| Sbjct 1338 GCTGGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACA 1279 Query 162309 TTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAA 162368 | | ||| ||||| || ||||||| || |||||| | | ||||| | ||| Sbjct 1278 CTTTTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAA 1219 Query 162369 GAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTT 162428 |||||||| || ||||| || || ||||| |||||||| ||||| |||||| | || || Sbjct 1218 GAGACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTC 1159 Query 162429 TCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACA 162488 || |||||||| |||||||| || |||||| | || || ||||| | || |||||| Sbjct 1158 TCAAACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATG 1099 Query 162489 TCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAG 162548 || | |||| || |||| | || ||||| ||||| ||||||||||| || Sbjct 1098 TCAGCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAA 1039 Query 162549 GAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTC 162608 |||||| | || || |||||||||||||||||||| |||||||| ||||| ||||| || Sbjct 1038 GAGATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTT 979 Query 162609 AATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTC 162668 || ||||| | ||||||||| | ||| || || || || ||||| ||| || | ||| Sbjct 978 AACGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTC 919 Query 162669 CCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 || || || || ||||| | || ||||| ||||||| Sbjct 918 CCTGAGGAGGTACTTCCACGTGGAAACGCTCTTTAAT 882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559440034705200