Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq888 376 4e-99 seq1642 152 8e-32 >seq888 Length=1579 Score = 376 bits (416), Expect = 4e-99 Identities = 497/687 (72%), Gaps = 2/687 (0%) Strand=Plus/Minus Query 176175 ATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTCCCTACAAC 176234 || ||||| ||||||||||| |||||| | ||| | | || ||||| |||||| Sbjct 1575 ATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACAAC 1516 Query 176235 GCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTA 176294 || ||||| ||| | |||||| |||||||| || ||| || ||| | |||||||| Sbjct 1515 GCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCACTT 1456 Query 176295 GGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTA 176354 || || || ||||||||||| || || || ||||| || | ||| || | || | Sbjct 1455 GGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTATC 1396 Query 176355 TTGTTTCTTC-AGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGC 176413 | ||||||| | || ||||||||||||||||| |||| ||||| |||||||| || || Sbjct 1395 CT-TTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAGC 1337 Query 176414 TGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCT 176473 ||| |||| || | |||||| || | |||||| || || | || || ||||| || || Sbjct 1336 TGGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACACT 1277 Query 176474 ATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGA 176533 | |||||||| || ||||| ||| |||||| | | || || | ||||| Sbjct 1276 TTTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGA 1217 Query 176534 GACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAG 176593 ||| || || ||||| || || ||||| |||||||| || || ||||| || || || Sbjct 1216 GACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTCTC 1157 Query 176594 TAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTC 176653 || |||||||||||||||||||| ||| | || || ||||| | || | ||| | || Sbjct 1156 AAACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATGTC 1097 Query 176654 AAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGA 176713 | |||| | |||| | || ||| || ||||| || ||||| || ||||| Sbjct 1096 AGCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAAGA 1037 Query 176714 GATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAA 176773 ||| | || || |||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 1036 GATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTTAA 977 Query 176774 CGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCC 176833 |||||| | | |||||||||||| || ||||| |||||||| |||||||||| Sbjct 976 CGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTCCC 917 Query 176834 AGAAGAAGTTCTACCTAGAGGTAACGC 176860 || || || || || | || ||||| Sbjct 916 TGAGGAGGTACTTCCACGTGGAAACGC 890 >seq1642 Length=12514 Score = 152 bits (168), Expect = 8e-32 Identities = 359/534 (67%), Gaps = 16/534 (3%) Strand=Plus/Plus Query 161166 AACCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAAC 161225 |||| | || || ||||| ||| || || ||||| |||||||| ||||| || ||| Sbjct 1638 AACCAAACGAAATATACAATTTAGCCGCCCAAAGTCACGTGAAAGTTTCTTTTGA--AAC 1695 Query 161226 CT--GAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCG 161283 | |||||||| | | || ||||| || || ||| | | ||| | || || || Sbjct 1696 GTCAGAATATACCTCCAACGTGGACGCTCTTGGCACACTACGGCTTTTGAATGCTGTACG 1755 Query 161284 -TCTCCTAGGTATGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATG 161342 ||| | | ||| || | | ||| | || || ||||| ||||||||| ||| || Sbjct 1756 ATCTGCAAATCTTGAAAGTTCTTG-CCGATTGTATCAAGCATCTACCAGTGAGCTGTTTG 1814 Query 161343 GGTTGGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATG 161402 || || | || |||||| |||||||| ||||| || ||||| || ||||||| Sbjct 1815 GGAAAGTTCGCGAAGTGCCACAGTCGGAAACAACCCCTTTTTATCCACGGTCACCATATG 1874 Query 161403 GCGTAGCTAAACTCTATGGATATTGGAT---TGTAAAGAACTACAGAGAGAGTTATGGGA 161459 || || |||| | || || ||||| |||||| ||| ||||| || || | Sbjct 1875 CAGTTGCAAAACAATTTGCATTCTGGATGCTTGTAAA---CTATAGAGAAGCGTACGGCA 1931 Query 161460 TGCACGCCAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCG 161519 |||| || ||| ||| |||| |||||||| |||||| | || | || |||| Sbjct 1932 TGCATCTTTCTAATGGGATTTTATTTAACCATGAAAGCCCACGAAGAGGGGCTACGTTCG 1991 Query 161520 TAACCCGTAAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTA--CAGGATTGTCT 161577 | || || || |||||||| | | | | | || | | | | | || ||| | Sbjct 1992 TCACGCGAAAAATTACTAGAGCAGTTGCTAGAATCA--AATGTAATTTGCAAGATACATT 2049 Query 161578 ATACCTAGGTAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGC 161637 || ||||||||| || | || | ||||||||||| |||||| |||| |||||||| || Sbjct 2050 GTATCTAGGTAATATAGATTCGAAGCGAGATTGGGGGCATGCTAAAGATTATGTGGAAGC 2109 Query 161638 TATGTGGTTGATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGG 161691 ||||||| | || |||| || || | || ||||| ||||| |||||| || Sbjct 2110 TATGTGGCTAATTCTACAGCAAGATATCCCGGATGATTATGTATGTGCCACTGG 2163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729846150798480