Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq888 385 6e-102 >seq888 Length=1579 Score = 385 bits (426), Expect = 6e-102 Identities = 497/686 (72%), Gaps = 0/686 (0%) Strand=Plus/Minus Query 179547 ATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGTATCAGACCTTACAAT 179606 || || || |||||| | ||||||||| |||| || | || | || ||||| Sbjct 1575 ATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACAAC 1516 Query 179607 GCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTG 179666 || ||||| || || | |||||||||||||||||| ||| ||||| || || || | Sbjct 1515 GCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCACTT 1456 Query 179667 GGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTG 179726 |||||||| ||||| || || || || || ||||| || | || ||| | || | Sbjct 1455 GGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTATC 1396 Query 179727 CTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCT 179786 || ||| | || || |||||||||||||| || |||| ||||| |||||||| || ||| Sbjct 1395 CTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAGCT 1336 Query 179787 GGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTG 179846 || |||| |||| |||||| || |||| || || || | || ||||| || ||| | Sbjct 1335 GGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACACTT 1276 Query 179847 TATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAG 179906 | |||||||| || |||| || || |||||| | | ||||| | |||||| Sbjct 1275 TTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGAG 1216 Query 179907 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCT 179966 ||||| || ||||| || || ||||| |||||||| ||||| |||||| | ||||| || Sbjct 1215 ACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTCTCA 1156 Query 179967 AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCC 180026 |||||||| |||||||| || |||||| | || || ||||| | || |||||| || Sbjct 1155 AACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATGTCA 1096 Query 180027 TCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAG 180086 | |||| || |||| | || ||||| ||||| |||||||||||| || ||| Sbjct 1095 GCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAAGAG 1036 Query 180087 ATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAAT 180146 ||| | || || |||||||| |||||||| || |||||||| ||||| |||||||| || Sbjct 1035 ATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTTAAC 976 Query 180147 GAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCCA 180206 ||||| | ||||||||| ||||| | ||||| |||||||| | |||||||| Sbjct 975 GAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTCCCT 916 Query 180207 GAAGAAGTTCTGCCAAGAGGTAATGC 180232 || || || || ||| | || || || Sbjct 915 GAGGAGGTACTTCCACGTGGAAACGC 890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605940317952480