Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq888 403 2e-107 >seq888 Length=1579 Score = 403 bits (446), Expect = 2e-107 Identities = 509/697 (73%), Gaps = 2/697 (0%) Strand=Plus/Minus Query 160221 TAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATCGGTATCCGTCCTTACA 160280 |||| ||||| ||||| ||||| |||||| | |||||| | || ||||| |||| Sbjct 1577 TAATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACA 1518 Query 160281 ATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCAT 160340 | || ||||||||||| | |||||||||||| || || |||||||| || |||||| Sbjct 1517 ACGCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCAC 1458 Query 160341 TGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCC 160400 | || ||||| | ||||| || || || || || || || || | ||| || | || Sbjct 1457 TTGGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTA 1398 Query 160401 TGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTG 160460 | | ||| | ||||| || ||||||||||| ||||||| ||||| |||||||| || | Sbjct 1397 TCCTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAG 1338 Query 160461 CTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACAC 160520 |||| |||| |||| |||||| || |||| || || || | || ||||| ||||||| Sbjct 1337 CTGGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACAC 1278 Query 160521 TGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAG 160580 | | |||||||| || |||| || || |||||| | | ||||| | |||| Sbjct 1277 TTTTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAG 1218 Query 160581 AGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTT 160640 ||||||| || ||||| || || ||||| |||||||| ||||| |||||| | || || | Sbjct 1217 AGACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTCT 1158 Query 160641 CTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACAT 160700 | |||||||| |||||||| || |||||| | || || ||||| | || | |||| | Sbjct 1157 CAAACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATGT 1098 Query 160701 CCAGTA-TTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAA 160759 ||| | |||| || |||| | || || || ||||| ||||||||||| ||| Sbjct 1097 -CAGCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAA 1039 Query 160760 GAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTG 160819 ||||| | || || |||||||| || ||||| || |||||||| ||||| || || || Sbjct 1038 GAGATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTT 979 Query 160820 AATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTC 160879 || ||||| | ||||||||| | ||| || || || || ||||| ||| || | ||| Sbjct 978 AACGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTC 919 Query 160880 CCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 || || || || ||||| | || ||||| ||||||| Sbjct 918 CCTGAGGAGGTACTTCCACGTGGAAACGCTCTTTAAT 882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552410438455680