Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq888 428 5e-115 >seq888 Length=1579 Score = 428 bits (474), Expect = 5e-115 Identities = 517/701 (74%), Gaps = 2/701 (0%) Strand=Plus/Minus Query 180343 TAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACA 180402 |||| ||||||||||| || || |||||| | |||||| | || ||||| |||| Sbjct 1577 TAATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACA 1518 Query 180403 ATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCAC 180462 | || ||||| ||||| | |||||| |||||||| || ||||| || || ||||||| Sbjct 1517 ACGCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCAC 1458 Query 180463 TGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCC 180522 | || ||||| | ||||||||||| || || || || ||||| | ||| || | || Sbjct 1457 TTGGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTA 1398 Query 180523 TACTCTTTCTTC-AGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTT 180581 | || ||||||| | || |||||||||||||| || |||| ||||| |||||||| || Sbjct 1397 TCCT-TTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTA 1339 Query 180582 GCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACA 180641 ||||| |||| || | |||| | || | ||||| || || | ||| || || |||||| Sbjct 1338 GCTGGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACA 1279 Query 180642 CTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAG 180701 || | |||||||| || ||||||| || || ||| | |||| |||| || Sbjct 1278 CTTTTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAA 1219 Query 180702 GAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTT 180761 || |||||||| ||||| || || ||||| |||||||| ||||| |||||| | ||||| Sbjct 1218 GAGACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTC 1159 Query 180762 TCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACA 180821 || |||||||| |||||||| || |||||| | || || ||||| | || |||||| Sbjct 1158 TCAAACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATG 1099 Query 180822 TCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAA 180881 || | |||| || |||| | || ||||| ||||| ||||||||||| ||| Sbjct 1098 TCAGCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAA 1039 Query 180882 GAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTG 180941 |||||| | || || |||||||||||||| || || |||||||| ||||| || || | Sbjct 1038 GAGATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTT 979 Query 180942 AATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTC 181001 || ||||| | ||||||||| ||||| || ||||| ||||| |||||| | | ||| Sbjct 978 AACGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTC 919 Query 181002 CCTGAAGAAGTTCTACCAAGAGGTAACGCATTGTGATTCAA 181042 ||||| || || || ||| | || ||||| | | |||||| Sbjct 918 CCTGAGGAGGTACTTCCACGTGGAAACGCTCTTTAATTCAA 878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610259824068480