Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq1358 87.8 4e-12 >seq1358 Length=20090 Score = 87.8 bits (96), Expect = 4e-12 Identities = 268/404 (66%), Gaps = 19/404 (5%) Strand=Plus/Plus Query 48330 AAAAAGAATGCTATTCTTACT-GGTGATGCAGGAGTCGGTAAAACTCAGATCGTCGATGG 48388 ||||| ||| | | ||||| | ||||| |||| || |||||||| || ||||| || Sbjct 6114 AAAAACAATCC-AGTCTTAATTGGTGAACCAGGTGTTGGTAAAACAGCTATTGTCGAAGG 6172 Query 48389 TTTTGCACAAGCCATTGCTGATGGTGACGTACCTGACTATCTGAAAGGTGTTGAGGTATT 48448 ||| || ||| |||| || ||||| || ||||| || | || | ||| |||| Sbjct 6173 TTTAGCTCAACGTATTGTTGCAGGTGATGTCCCTGAAAATTT---AGATTGTGAATTATT 6229 Query 48449 ATCTCTTA-ACGTTTCTGCTGTAACTGCTGGTACAAAATACCGTGGTGAATTCGAAGAAC 48507 || |||| | | ||| ||| ||| ||| | ||| | | |||||||| ||||| | Sbjct 6230 TTC-CTTAGATATGGGTGCATTAATTGCAGGTGCGAAACATCAAGGTGAATTTGAAGAGC 6288 Query 48508 GTATGGAAG--GTATTATTA-AAG-AACTTAAAAAACGAGAA-----AATGTAATTTTGT 48558 | | ||| || |||| | ||| ||| | |||| |||| || || ||||| | Sbjct 6289 GATTAAAAGCTGTTTTATCAGAAGTAACAGATGAAACTAGAACGAAAAAAGTGATTTTAT 6348 Query 48559 TCATTGATGAAGTACATATTATGATGGGTGCTGGTGGTAGCAGCACTGGATCTATGGATA 48618 | |||||||| | ||| | | |||||| | ||| | | || ||| | |||||| Sbjct 6349 TTATTGATGAGATGCATTTGTTAATGGGTACCGGTAGAACAAG---TGGTGCAATGGATG 6405 Query 48619 TGAGCAATATCATGAAACCTGCACTTTCACGTGGTGATATTCGTGTTATCGGTGCAACAA 48678 ||| | | ||||| ||| ||||||| | | | ||| |||||||| | Sbjct 6406 CTGCTAATTTATTAAAACCAATGCTTGCACGTGGAAAATTAAGATGTATTGGTGCAACGA 6465 Query 48679 CTTATGAGGAATATCGCCAGAACATTGAAAAAGATGCTGCATTT 48722 | |||| |||||||| || | ||||||||||| ||||||| Sbjct 6466 CAAATGATGAATATCGTCAATATGTTGAAAAAGATAGTGCATTT 6509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108865244476854