Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq790 205 7e-48 seq8698 203 3e-47 >seq790 Length=27566 Score = 205 bits (226), Expect = 7e-48 Identities = 403/593 (68%), Gaps = 16/593 (3%) Strand=Plus/Plus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || || | ||||| ||| ||||| |||||| | ||||||| || ||||| Sbjct 7099 ATTGGTGGTTTAGGCAAAGAATTTAAAGAAATTTTTCGTCGTGCATTTGCTTCACGTGTA 7158 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 | | || |||||| || || | |||||| | |||||| || |||| | || Sbjct 7159 TATCCTAAAGATGTGATAGAAAAGTTGGGAATTCGACATGTGAAAGGTATTTTATTATAC 7218 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAA 19422 || ||||| |||||||| |||||||||||||| | || || || || | | ||| Sbjct 7219 GGTCCACCTGGTTGTGGGAAAACATTAATTGCACGTAAAATTGGTGAA--GCATTGAAAG 7276 Query 19423 CAA--CCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGG 19480 ||| || || |||||| | ||||| |||||||| ||||||||||| || ||| || | Sbjct 7277 CAAGGCCGCCAAAAATTATCAATGGGCCTGAAATTTTAAATAAATACGTCGGTGGTTCAG 7336 Query 19481 AAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCA 19540 | || || | || ||||| || || ||||| ||| | | |||||| Sbjct 7337 AGGAGAAAATTCGTGAACAATTTGCAGATGCAGAAGAGGAATATAGGAAATTAGGG---G 7393 Query 19541 AAAGTTCT---TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAG 19597 || |||| || || || || || | |||||| | || ||||| ||||| ||| | | Sbjct 7394 AAGATTCTGAATTACATATCATTATTTTTGATGAAATCGATGCAATATGTAAACAACGTG 7453 Query 19598 GTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAAT 19651 | || | | | ||| || ||||| ||||||||||||| | || ||||| Sbjct 7454 GATCATCCAGAGATAGCACTGGTGTTGGTGACAATGTTGTCAATCAATTGCTTGCAAAAC 7513 Query 19652 TAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAAT 19711 |||| ||||| | ||| | |||||||||||||| ||||| ||||| ||||| || Sbjct 7514 TAGATGGTGTGGAGCAAGTAAATAATATTTTAGTAATTGGTATGACAAATAGGAAAGATA 7573 Query 19712 TAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTAC 19771 | || || || || | || || ||| |||||||| |||| | |||||| || | Sbjct 7574 TGATCGATGATGCGTTGATGCGTCCAGGTAGGTTGGAAGTAAAAGTTGAAATTGGATTGC 7633 Query 19772 CCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGA 19824 | ||||||| ||| | |||||||| | || |||||||||| ||| || Sbjct 7634 CAGATGAATTTGGCAGGACACAAATTTTACAAATTCATACATCAAAAATGAGA 7686 >seq8698 Length=1787 Score = 203 bits (224), Expect = 3e-47 Identities = 579/876 (66%), Gaps = 27/876 (3%) Strand=Plus/Minus Query 43709 TTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGG 43768 || ||||||||| || |||| || ||||||||||| |||||||| | || || || ||| Sbjct 1778 TTCCCAATTCAACATAATGATATTTGGCAAATGTATAAAAAAGCTGAAGCATCTTTCTGG 1719 Query 43769 ACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCA-CA 43827 || || ||||| | || ||| | |||| || | ||||| ||||| | | Sbjct 1718 ACTGCGGAAGAGTTAGACTTGGCACAAGAT---GCGAAA--GATTGGGATAAAATGAGCG 1664 Query 43828 AGAAAAACATTTTATATCTTTGG-----TTTTGGCGTTTTTTGCTGCGAGCGACGGGATA 43882 | || | | ||| || || | | ||||| ||||| ||||| |||||| || Sbjct 1663 ATAACGA-ACGTTACTTCATTAGCAACGTATTGGCATTTTTCGCTGCATCCGACGGTATT 1605 Query 43883 GTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGT 43942 || || ||||||||| | | ||| | | ||||| ||| | || |||||||| ||| Sbjct 1604 GTAAACGAAAATTTGTTGATGAACTTTTCCAACGAAGTGCAAGTGCCTGAAGCACGTTGT 1545 Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || ||||| |||||||| || || |||||||||||| | ||| |||| | | ||| Sbjct 1544 TTCTATGGCTTTCAAATCGCTATCGAAAATATTCATGCAGAAGTGTATTCCTTGTTAATA 1485 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || || ||||| |||| | || || || ||||| ||||| || || ||| | Sbjct 1484 GACACTTACATTCGTAATGGTCCAGAAAAAACGCGTTTGTTGAATGCTATTGATACAATC 1425 Query 44063 CCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCA---AATGATTCT 44119 ||| | ||| | |||||||| ||| | | |||| || || || | || Sbjct 1424 GATGCCGTCAAAGAAAAAGCAGAATGGTGCTTGCGTTGGACCAACGCAGACAACGCATCG 1365 Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAG-TTGTGGAAGGCATTTTCTTTTCAGGATCGTT 44178 || | ||| || | || || || || | ||| ||||| || ||||| || || || Sbjct 1364 TTCGCAGAGCGCGTCGTTGCATTCGCTGCGTGT-GAAGGTATCTTCTTCAGTGGTTCCTT 1306 Query 44179 TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 ||| | ||||||||||| ||||| ||| ||||||| || || |||||||| || Sbjct 1305 CTGTGCCGTGTTTTGGTTAAAAAAACGTGGTATGATGCCAGGTTTATGTTTTTCAAACGA 1246 Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGT--TACTTGGAT-A 44295 || || ||||||||||| || ||||| ||||| || ||||| | ||| ||| | Sbjct 1245 ATTGATTTCACGTGATGAAGGTTTGCATTGTGATTTCGCATGCTTATTATACAAAGATCA 1186 Query 44296 TCTAGGAGA-CGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAA 44354 | ||| | | || | | || | || ||| || | | | || || Sbjct 1185 TTTAGTAAATCGTTTA----CCAGAGGAAACGATTCATTCAATCATCGGCAATGCGGTTG 1130 Query 44355 AGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAA 44413 | || ||| ||| |||| | | | ||||||| || | || || || ||||| | || Sbjct 1129 AAATCGAAAAAGTATTTGTCTCCCAATCATTACCAGTTGAATTGATTGGCATGAACTCAA 1070 Query 44414 CTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGC 44473 | |||||| |||||| ||||||| | || |||||||| | | | | ||| Sbjct 1069 C-ATTGATGTGCCAATACATTGAATTCTGCGCTGATCGTTTGTTACAAGCATTAGGTGTA 1011 Query 44474 GATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGC 44533 |||| || | || | ||||| || |||| ||||||| || || ||| |||| Sbjct 1010 TCTAAAATGTACAATGCATCCAACCCATTCGATTGGATGGAAATGATCTCCTTGCAAGGT 951 Query 44534 AAAACAAACTTTTTTGAAAAACGCGTTGGAGAATAT 44569 ||||| ||||||||||||||||| || || |||||| Sbjct 950 AAAACCAACTTTTTTGAAAAACGTGTAGGCGAATAT 915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397411696821730