Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq769 96.9 3e-15 seq6389 91.5 1e-13 seq2305 89.7 4e-13 >seq769 Length=28997 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/120 (79%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 131378 ATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCA 131437 || || | ||| |||||||| || || || || ||||| |||||||||||| |||| | Sbjct 12960 ATCTCAGTGCATAAATTACTACTTTTAATCGTTCCCAAGTTTTGTTGATTGGATTTACGA 12901 Query 131438 TTCACATG-GTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAAT 131496 || ||||| || ||||||| |||||| ||||| || ||||| |||||| ||||||| || Sbjct 12900 TT-ACATGCATCTTTGTACAACATGTATGGCGTACCTGTTTCAACTTGACTTTCAATGAT 12842 Score = 86.0 bits (94), Expect = 5e-12 Identities = 189/280 (68%), Gaps = 5/280 (2%) Strand=Plus/Minus Query 130735 ATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTA 130794 |||||| | ||||| || |||| | ||| ||||| || || || || | | ||| Sbjct 13609 ATCTTTCAATAAATGTTTGTTAACACATGTAAATTCACCGGCAAGTACACGGCGATTGTA 13550 Query 130795 AATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGC 130854 || ||| ||| | |||||||| ||||||||||||| | ||||| | |||| ||| Sbjct 13549 CATATTGGAAGTGTATGGTTCAAAACATTCGTTGTTGCCCATAATTTGCGAGGTAGATGC 13490 Query 130855 GGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGAT-TTTTCGCT 130913 || ||||| ||| |||| || || || | | ||| || |||| || ||| Sbjct 13489 AGTTGGCATTGGTGCAACTAGTAAGGAGTTTCTTACACCATGTTCTTTGATATTAGCGCG 13430 Query 130914 TCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTA 130973 | ||| | |||||||||| || || || |||| |||||||||||| ||||| Sbjct 13429 T-AATCCTGCCCAATCCCAACGATCGGATGGAGTGAC---GTTCCACATATCTGGTTGTA 13374 Query 130974 GTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTA 131013 || ||||| || | |||||| |||| | | || ||| Sbjct 13373 AAATTCCTTTGCTTACTGGACTGCCTTCGTATGTTTTGTA 13334 >seq6389 Length=961 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || || || ||||| || ||||| |||||||| |||||||||||||| || || ||| Sbjct 13 CCACCACGTAAACGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCT 72 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| | || | ||||| | |||||||| ||| | || | || ||||| || || || Sbjct 73 AATG-TACGTCCATCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGG 131 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCA 27171 | || |||||||| |||||| | ||||| Sbjct 132 AATCCCTTCTTTATCTTGGATCTTTTGTTTCA 163 >seq2305 Length=8964 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || || | || || ||||| || || | |||||||||||||||||||| | Sbjct 1546 TGCCACCACGTAATCTTAAAACTAAATGCAATGTTGCTTCTTTTTGAATATTGTAGTCAC 1487 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | ||| | ||||| | ||||| || || | || | ||| |||||||| || | Sbjct 1486 TAAGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGTG 1427 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| |||||||| || || | ||| | | |||| | ||| || | | ||| | Sbjct 1426 GGATACCTTCTTTATCTTGTATTTTTTGTTTAACGTTTTCAATAGTATCAGACGGTTCTA 1367 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCA 27225 | || || || || | ||| || |||| Sbjct 1366 CATCAAGCGTGATGGTTTTCCCAGTCA 1340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424887033890352