Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq8698 123 3e-23 >seq8698 Length=1787 Score = 123 bits (136), Expect = 3e-23 Identities = 344/515 (67%), Gaps = 17/515 (3%) Strand=Plus/Plus Query 74762 ATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCC 74821 |||| | |||||||| | |||||||| || ||||| | | || ||||| | || Sbjct 1218 ATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAAAAACATAAACCTGGCATCATACC 1277 Query 74822 ACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACA 74881 ||| || || |||||||| | ||||||||||||||||||||||||||| ||||| |||| Sbjct 1278 ACGTTTTTTTAACCAAAACACGGCACAGAAGGAACCACTGAAGAAGATACCTTC-ACACG 1336 Query 74882 C-GCAAAGGCGACAAGGCGTTGCGCGAACGGTGC---ATCGGAAGTCATCCAAGTCTGAG 74937 | || || || || | ||| | ||||||| ||| || | | ||||| | || Sbjct 1337 CAGCGAATGCAACGACGCGCTCTGCGAACGATGCGTTGTCTGCGTTGGTCCAACGC-AAG 1395 Query 74938 C-CCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCC 74996 | |||||| |||||| |||||| ||| || ||||| || || | || | | || Sbjct 1396 CACCATTCTGCTTTTTCTTTGACGGCATCGATTGTATCAATAGCATTCAACAAAC--GCG 1453 Query 74997 TTCTCTTCGGGATCCTTGACGA----GCTTGTCAATCATAAGTGAGTACGTCTCCGAATG 75052 || | ||| ||| || | |||| |||| || | | || ||| || | ||| Sbjct 1454 TT-TTTTCTGGA-CCATTACGAATGTAAGTGTCTATTAACAAGGAATACACTTCTGCATG 1511 Query 75053 AATCGACTCGTTGAACGACTGGTACG-CGTAGAAAGACCGCGCCTCTGCAATCTGTACAT 75111 ||| ||| | | ||| | | | | | |||||| | || || || | | || || | Sbjct 1512 AATATTTTCGAT-AGCGATTTGAAAGCCATAGAAACAACGTGCTTCAGGCACTTGCACTT 1570 Query 75112 CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAG 75171 | || ||||| ||||| | ||| || | || || ||||| || || |||||||| | Sbjct 1571 CGTTGGAAAAGTTCATCAACAAATTTTCGTTTACAATACCGTCGGATGCAGCGAAAAATG 1630 Query 75172 CCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGT 75231 ||| ||| | | || |||| || || | || | | ||| |||||||| ||| | Sbjct 1631 CCAATACGTTGCTAATGAAGTAACGTTCGTTATCGCTCATTTTATCCCAATCTTTCGCAT 1690 Query 75232 CCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266 | ||||| || | ||| || | ||||||||| Sbjct 1691 CTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAA 1725 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 74457 TTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTC 74516 |||||||| || || || || ||||||||||||||||| || |||| ||| ||||| | Sbjct 910 TTTGAATATTCGCCTACACGTTTTTCAAAAAAGTTGGTTTTACCTTGCAAGGAGATCATT 969 Query 74517 TCCATCCAGTCGAAAGGGTT 74536 |||||||| ||||| ||||| Sbjct 970 TCCATCCAATCGAATGGGTT 989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547153439530800