Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq810 123 2e-23 seq6389 93.3 3e-14 seq775 89.7 3e-13 >seq810 Length=26514 Score = 123 bits (136), Expect = 2e-23 Identities = 174/240 (73%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGT-GCTCTCCTTTTGAATGTTATAATCTGA 34538 || || | |||||| || || ||||| | ||| ||| || ||||| ||||| || || Sbjct 7742 CCTCCACGAAGACGTAATACTAAATGTAAAGTTGCT-TCTTTTTGGATGTTGTAGTCACT 7684 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 |||||| || | ||||| | ||||||||| ||||| || | ||| ||||| || || || Sbjct 7683 AAGTGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGG 7624 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTC--TTCGCTCTCC 34656 | ||| || |||||| ||||||||||||| | ||| || || | | ||| Sbjct 7623 AATTCCTTCTTTGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCT-- 7566 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGTA 34716 || || | ||| || |||||||| || || ||||| || ||||| |||||| ||||| || Sbjct 7565 ACATCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCATGATGATTATA 7506 >seq6389 Length=961 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/208 (71%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 |||||| || ||||| | || || |||||||| |||||||| | | ||| || | Sbjct 24 ACGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCTAATGTACGTCC 83 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 ||||| | ||||||||| || ||||| || || |||||||| || || | || || || Sbjct 84 ATCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGGAATCCCTTCTTT 143 Query 34611 GTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGT--CTTCGCTCTCCACTTCCACGGT 34667 ||| |||||||||||| | ||| |||| || | ||| |||| | || | || Sbjct 144 ATCTTGGATCTTTTGTTTCACACG-CGAAATGGTATCGCTTGCCTCTGTA--TCTAGAGT 200 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACA 34695 || ||||| || ||||| ||||| ||| Sbjct 201 AATTGTTTTTCCAGTTAAAGTTTTTACA 228 >seq775 Length=28483 Score = 89.7 bits (98), Expect = 3e-13 Identities = 124/168 (74%), Gaps = 7/168 (4%) Strand=Plus/Minus Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 ||||| | ||||||||| ||||| || | ||| ||||| || || || | ||| || ||| Sbjct 10618 TCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 10559 Query 34612 TCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC--TTCGCTCTCCACTTCCACGGTT 34668 ||| ||||||||| ||||||| | ||| || || | | ||| || || | || Sbjct 10558 TCTTGGATCTTTTG-TTTAACGTTTTCAATAGTATCAGATGGTTCT--ACATCAAGAGTG 10502 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG-TTGATTGT 34715 || |||||||| || || ||||| || ||||| |||||| || ||||| Sbjct 10501 ATGGTTTTACCAGTCAATGTTTTTACGAAAATTTGCATGATTAATTGT 10454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314694518075018