Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq810 147 2e-30 seq2305 141 8e-29 seq775 123 2e-23 seq6389 114 1e-20 seq4707 111 1e-19 seq4160 102 7e-17 seq3001 93.3 4e-14 >seq810 Length=26514 Score = 147 bits (162), Expect = 2e-30 Identities = 180/245 (73%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 26972 TTTTAATTTATACGC--CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACT 27029 ||||| ||||| | |||||| || || ||||||||| |||| || || | || || Sbjct 7498 TTTTATATTATAATCATCATGCAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACC 7557 Query 27030 CTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAA 27089 ||||| || ||||| || || | ||||| | || |||||||| ||||||||||||||| Sbjct 7558 CTTGATGTAGAACCATCTGATACTATTGAAAACGTAAAACAAAAGATTCAAGACAAAGAA 7617 Query 27090 GGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG 27149 || || ||||| |||||||| ||| | || | || || |||||||||||||| | Sbjct 7618 GGAATTCCACCAGATCAACAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACGT 7677 Query 27150 ACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGG 27209 || || || |||||||| ||||| || | || |||||||| || || ||| | || Sbjct 7678 ACACTTAGTGACTACAACATCCAAAAAGAAGCAACTTTACATTTAGTATTACGTCTTCGT 7737 Query 27210 GGTGG 27214 || || Sbjct 7738 GGAGG 7742 >seq2305 Length=8964 Score = 141 bits (156), Expect = 8e-29 Identities = 156/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| || || | || || ||||| || |||||||| || | ||||| | || |||| Sbjct 1340 TGACTGGGAAAACCATCACGCTTGATGTAGAACCGTCTGATACTATTGAAAACGTTAAAC 1399 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 ||||||| ||||| |||||||| || ||||| |||||||| ||||| |||| || |||| Sbjct 1400 AAAAAATACAAGATAAAGAAGGTATCCCACCAGATCAACAACGTTTGATATTTGCAGGCA 1459 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 ||||||||||||| | || || || ||||| |||||||| || | || || | Sbjct 1460 AACAATTGGAAGATGGGCGTACACTTAGTGACTACAATATTCAAAAAGAAGCAACATTGC 1519 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| ||||| | || || |||||||| Sbjct 1520 ATTTAGTTTTAAGATTACGTGGTGGCAT 1547 >seq775 Length=28483 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || |||||||| |||| || || | || |||||||| || ||||| || Sbjct 10463 CATGCAAATTTTCGTAAAAACATTGACTGGTAAAACCATCACTCTTGATGTAGAACCATC 10522 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || |||||||| || |||||||||||||| || ||||| ||||| Sbjct 10523 TGATACTATTGAAAACGTTAAACAAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCA 10582 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 ||| ||| | || | || || |||||||||||||| Sbjct 10583 ACAACGTCTTATCTTTGCAGGTAAACAATTGGAAGA 10618 >seq6389 Length=961 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26999 TGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGA 27058 |||||||||| | || || || | |||||||| || || | ||| | ||| Sbjct 228 TGTAAAAACTTTAACTGGAAAAACAATTACTCTAGATACAGAGGCAAGCGATACCATTTC 169 Query 27059 GATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAAT 27118 | || |||||||| || ||||| |||||||| || ||||| || ||||| || || || Sbjct 168 GCGTGTGAAACAAAAGATCCAAGATAAAGAAGGGATTCCACCAGACCAACAACGATTGAT 109 Query 27119 ATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGA 27178 || ||| || |||||||| ||||| | || | | ||||| || |||||||| || Sbjct 108 ATTCGCAGGTAAACAATTAGAAGATGGACGTACATTAGCTGATTATAATATTCAAAAAGA 49 Query 27179 GTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || ||||| ||||||||||| || ||||| Sbjct 48 ATCTACGTTGCATTTAGTTTTGCGTTTACGTGGTGG 13 >seq4707 Length=625 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 27062 GGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATA 27121 |||||| ||||| || |||||||||||||| || || || |||||||| ||| | || | Sbjct 250 GGTCAAGCAAAAGATCCAAGACAAAGAAGGAATTCCTCCAGATCAACAACGTCTTATCTT 309 Query 27122 CGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTC 27181 || || |||||||||||||| | || |||| ||||| || || ||||| || | Sbjct 310 TGCTGGTAAACAATTGGAAGATGGACGTACTCTTTCTGATTATAATATCCAAAAAGAAGC 369 Query 27182 GACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| | ||||| || |||||||| || ||||| || Sbjct 370 AACCCTTCATTTAGTATTGCGTTTACGTGGTGGTAT 405 >seq4160 Length=5066 Score = 102 bits (112), Expect = 7e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 ||||| |||||| | || || || | || |||||||| || ||||| || || | ||| Sbjct 876 TTTGTTAAAACTTTAACTGGTAAAACCATCACTCTTGATGTAGAACCATCTGATACAATT 935 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 | | | ||||||||||| ||||| |||||||| || || || | |||||| ||||| Sbjct 936 GCAAATATAAAACAAAAAATACAAGATAAAGAAGGTATCCCTCCAGGTCAACAACGTTTG 995 Query 27117 ATATACGCCGGCAAACAATTGGAAGA 27142 ||||| || || |||||||||||| Sbjct 996 ATATATGCGGGACTACAATTGGAAGA 1021 >seq3001 Length=6688 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||| | | | |||||| | | || | || |||| | |||| Sbjct 4242 ATGCAGATTTTTGTTAAAAATTTAAGAGGCAAGACGACCACCTTGGATGTGGTAGCGTCT 4301 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | |||| | || || || | ||||||||| |||||||| || | || |||| Sbjct 4302 GACACTGTTGAAAATGTTAAGCAGAGAATTCAAGAAAAAGAAGGTATCGCTCCAAGTCAA 4361 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||| || || |||||||||||||| | || || | || |||||||| Sbjct 4362 CAAATTTTAATCCTTGCTGGGAAACAATTGGAAGATACTTGCACTTTGTCTGATTACAAT 4421 Query 27168 ATTCAAAAGGA 27178 ||| |||| || Sbjct 4422 ATTGAAAAAGA 4432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434868677953920