Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq401 432 5e-116 seq888 358 8e-94 seq2703 309 4e-79 >seq401 Length=773 Score = 432 bits (478), Expect = 5e-116 Identities = 497/667 (75%), Gaps = 9/667 (1%) Strand=Plus/Minus Query 184289 GTTGGTGGTAAGATTGCTAATGCTCCTTTTGTACTAGGTACAGCAGACTTTATGATACAT 184348 || ||||| ||| |||||| |||||| | |||| || || ||||| ||||| ||| Sbjct 707 GTAGGTGGAAAGGTTGCTATTGCTCCAATCCCCTTAGGAACTGCTGACTTGATGATTCAT 648 Query 184349 CACATACACGCTTTCCAGATTCATGTTTGTGTATTAATTCTTCTCAAGGGTGTTTTATAC 184408 || || || || ||||| || || || || ||||||||||| || |||||| | || Sbjct 647 CATATTCATGCATTCCAAATACACGTAACAGTTTTAATTCTTCTTAAAGGTGTTCTGTAT 588 Query 184409 TCTAGAAACTCACAATTAATACCAGATAAGAGTAAG-TTAGGATTCAGATTCCCTTGTGA 184467 | |||| ||||| ||| || || ||||| || | |||||||| |||||||| ||||| Sbjct 587 GCAAGAAGCTCACGATTGATTCCTGATAA-AGCATCCTTAGGATTTAGATTCCCATGTGA 529 Query 184468 TGGTCCTGGTAGAGGAGGCACTTGTCAGGTATCAGGATGGGATCATGTATTCCTTGGTTT 184527 ||| |||||||||||||| || ||||| || || ||||| ||||| ||| | || | Sbjct 528 TGGCCCTGGTAGAGGAGGTACATGTCAAGTTTCTTCTTGGGACCATGTTTTCTTAGGACT 469 Query 184528 ATTCTGGATGTATAATTGCATCTCTATAGTAATCTTCCACTTTAGTTGGAGAATGCAAGA 184587 |||||||||||||| || | || || || || ||||| ||| ||||| |||||| Sbjct 468 CTTCTGGATGTATAACTGTTTATCAATTGTTATTTTCCATTTTTCTTGGAAGATGCAAA- 410 Query 184588 TGTATGGGGTCTATCAGGAGGTAACTTTGCTCAGAGTTCAATTACAATCAATGGATGGTT 184647 | | || | ||||||||||| |||| ||| | ||||| || ||||| ||| | Sbjct 409 ------GCGACTTACTGGAGGTAACTTCTCTCAAAGTGCCATTACTATTAATGGTTGGCT 356 Query 184648 GAGAGACTTCTTATGGTCACAGTCAAGTCAAGTTCTCAATAGTTATGGACAAGACATCAG 184707 |||||||| |||||| | || || ||| ||| | | |||||||| || || || Sbjct 355 TAGAGACTTTTTATGGGCCCAATCTTCTCAGGTTTTGACAAGTTATGGTTCAGCTATAAG 296 Query 184708 CATGTATGGTTTGCTATTTCTTGGAGCACATTTTGTATGGGCATTCAGTTTGATGTTCCT 184767 |||||||| || | ||| | |||||||| ||| | |||||||| || || |||||| | Sbjct 295 TATGTATGGCCTGATGTTTTTGGGAGCACACTTTATCTGGGCATTTAGCTTAATGTTCTT 236 Query 184768 ATGGAGTGGTAGAGGATACTGGCAAGAGTTGATAGAGTCTATTGCTTGGGCACATAACAA 184827 || || || ||||| ||||||||||| | | || || |||| |||||| |||||||| Sbjct 235 ATTCAGCGGAAGAGGTTACTGGCAAGAACTATTTGAATCAATTGTTTGGGCTCATAACAA 176 Query 184828 ATTAAAACTTGCACCTACCATTCAACCAAGAGCAATGTCAATTACACAAGGACGTGCTGT 184887 | | ||| |||| || || ||||||||||| ||| | |||||||| ||||| ||||| || Sbjct 175 ACTGAAAGTTGCTCCAACAATTCAACCAAGGGCACTATCAATTACTCAAGGTCGTGCAGT 116 Query 184888 TGGAGTTGCACACTTCTTACTTGGAGGTATTGCCACAACATGGGCATTCTTCTTTGCTCA 184947 ||| ||| | ||||||||| | || |||||||| || || |||||||||||| ||||| Sbjct 115 TGGTGTTACTCACTTCTTAGTGGGTGGTATTGCTACTACTTGGGCATTCTTCCATGCTCG 56 Query 184948 CCTTATC 184954 |||| || Sbjct 55 CCTTTTC 49 >seq888 Length=1579 Score = 358 bits (396), Expect = 8e-94 Identities = 508/717 (71%), Gaps = 23/717 (3%) Strand=Plus/Minus Query 191120 ATAGGATTCATGTTACGTCAGTTTGAAATTGCAGGATTGGTGGGTATTAGACCTTACAAT 191179 || ||||| ||| | ||||| |||||||||||| | || ||| | || ||||| Sbjct 1575 ATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACAAC 1516 Query 191180 GCTCTTGCTTTTTCTGCTGTCATAGCAGTTTTCACAAGTGTATTCTTAATCTATCCACTT 191239 || |||| || || ||| || || || ||| | ||||||| | || || |||||| Sbjct 1515 GCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCACTT 1456 Query 191240 GGTCAGCACAGTTGGTTCTTTGCACCTTCATTTGGAGTTGCAGCAATCTTTAGATATATT 191299 || ||| | |||||||||||||||||||| || || || | ||| || | | ||| Sbjct 1455 GGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTATC 1396 Query 191300 CTATTCATTCAAGGTTTCCACAATATTACACTCAACCCTTTCCACATGATGGGAGTTGCA 191359 || ||| | ||||| |||||||| ||||| |||| |||||||||||||| || || Sbjct 1395 CTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAGCT 1336 Query 191360 GGTATTCTAGGTGGAGCATTACTATGTGCCATTCATGGTGCTACAGTACAGAACACCTTG 191419 || | || || | |||| | || ||||| ||||| ||||| |||||| | ||||| | Sbjct 1335 GGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACACTT 1276 Query 191420 TATGAGGACTCAAGCATCTATACAGATGGTCAAG-TTCAAAGTACAACCTTTAGAGCATT 191478 | || ||||||| | | |||||| || || | || || Sbjct 1275 TTCGA------------------AGATGGTGATGGTTCAAAC----ACATTCCGTGCGTT 1238 Query 191479 TGATCCAACACAGGATGAGGAAACTTATTCTATGATCACTGCAAACAGATTCTGGTCACA 191538 | | |||||||| | ||| || ||||| || ||| | || || ||| | ||||||||||| Sbjct 1237 TAACCCAACACAAGCTGAAGAGACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACA 1178 Query 191539 GATATTTGGTATTGCATTCTCTAACAAAAGATTTCTACACTTCTTGATGTTGTTTGTTCC 191598 ||| || ||| | |||||||| ||||| | | || |||||||| ||| | || || || Sbjct 1177 GATTTTCGGTGTAGCATTCTCAAACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACC 1118 Query 191599 TGTAATGGGAATGTGGACATCATCAATAGGTATTGTAGGTCTTGCACTTAACTTAAGAGC 191658 ||||| ||| | |||| ||| || | ||| |||| || | ||| |||| | | || Sbjct 1117 TGTAACAGGATTATGGATGTCAGCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGC 1058 Query 191659 ATATGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTA 191718 ||| ||||| ||||| |||||||| | || || ||||| || ||||||||||| ||||| Sbjct 1057 ATACGATTTCGTATCGCAAGAGATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTA 998 Query 191719 TACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCTTCAGTAGACCAACC 191778 || ||||| ||||||||||| |||||||| | ||||||||| | | ||| || || Sbjct 997 CACAAAGAATATTCTTCTTAACGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCC 938 Query 191779 TCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTACCTAGAGGAAATGCATTGTAATT 191835 ||||| ||| |||| ||||| ||||| || || || | ||||| || | ||||| Sbjct 937 ACATGAAAACCTTGTATTCCCTGAGGAGGTACTTCCACGTGGAAACGCTCTTTAATT 881 >seq2703 Length=698 Score = 309 bits (342), Expect = 4e-79 Identities = 463/647 (72%), Gaps = 13/647 (2%) Strand=Plus/Minus Query 185929 TCATAAAGGATTATATGAAACAGTTACAGACTCATTACACCTACAGTTAGGTCTTGCACT 185988 |||| | || | |||||||| ||||| | || | ||| | || ||||| | || | Sbjct 648 TCATGATGGTATCTATGAAACTGTTACTAATTCTCTTCACTTTCAATTAGGCTTAGCTTT 589 Query 185989 TGCATCTCTAGGTGTTGTTACTAGTCTGGTGGCACAACATATGTACTCAATGCCATCCTA 186048 || |||| ||||||| ||| | || || ||||||||| | | || || || Sbjct 588 GGCTGCTCTTGGTGTTGCAACTTCATTAGTAGCTCAACATATGGGAGCTTTACCTTCTTA 529 Query 186049 TGCTTTCATAGCACAGGCGCATACTACGCAAGCTGCTCTATATGTTCATCATCAATACAT 186108 |||||| || || | | || || || | ||| ||||| |||||||||||||| Sbjct 528 TGCTTTTATTGCTAGAGATTACACCACACAGTCAGCTTTATATACCCATCATCAATACAT 469 Query 186109 TGCAACTGCTCTGA-TGGTTGGTGCTTTTGCGCATGGAGCAATATTTTTTGTTAGAGACT 186167 || | || ||| | |||||||||||||||| |||||||||||||| ||||| ||||| | Sbjct 468 AGCCA-TGTTCTTAATGGTTGGTGCTTTTGCTCATGGAGCAATATTCTTTGTCAGAGATT 410 Query 186168 TTGATCCTACTCTGAATAAGGACAATGTTCTTGATAGAATGCTACAGCACAAA-GAAGCA 186226 ||||||| || ||||| || ||||| | | | | | || | ||||| ||||| Sbjct 409 ATGATCCTGAACTTAATAAAGATAATGTATTGGCTCGTGTATTAG-GTACAAAAGAAGCT 351 Query 186227 ATTATAAGTCACTTAAGTTGGGTATCACTAT--TCCTTGGATTCCATACTTTAGGAATCT 186284 |||| ||||| || |||||||| |||||| |||| || || ||||| |||||||| | Sbjct 350 CTTATCAGTCATTTGAGTTGGGT--CACTATGATCCTGGGTTTTCATACATTAGGAATAT 293 Query 186285 ATGTCCATAATGATGTAGTAATGGCATTTGGTCATCCTGAGAGACAGATATTAATTGAAC 186344 |||| |||||||| || || | || ||||| ||||||| | ||| || || || |||| Sbjct 292 ATGTTCATAATGACGTTGTTGTAGCTTTTGGAAATCCTGAAAAACAAATTTTGATCGAAC 233 Query 186345 CTATATTTGCACAGTGGATACAGGCAGCATCAGGTAAGATGATGTATGGATT-AAGTTTC 186403 | |||| || |||| | |||||||| ||| ||||||||||||||||| || | Sbjct 232 CAGTATTCGCTCAGTTTGTTCAGGCAGCTCAAGGAAAGATGATGTATGGATTTAACGCAC 173 Query 186404 TTACTATCTGATCCAAATAGTGCTGCAAGTCTAGCAGCAGAGAGTATGCCTGGTAATCAT 186463 || || || ||||| | |||| | |||||||| || ||| | | |||| || || ||| Sbjct 172 TT-CTTTCGGATCCTACTAGTTCAGCAAGTCTGGCGGCAAACTCTTTGCCAGGAAACCAT 114 Query 186464 TACTGGATGAGTGCTATGAATGATCAA---ACAAACAGTCTGTTTCTACCAATAGGACCT 186520 ||||||||| | || ||| ||| || ||| ||| ||||||| || || Sbjct 113 TACTGGATGGATTTAATTAATAGACAAGATGCATTAAGTGCTTTTTTACCAATTGGCCCA 54 Query 186521 GCTGATTTATTAGTTCATCATGCTATTGCACTTGGATTACATACTAC 186567 || ||||| ||||||||||||||||| || |||||| | ||||| || Sbjct 53 GCAGATTTCTTAGTTCATCATGCTATAGCTCTTGGACTTCATACCAC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631355012085360