Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq810 105 5e-18 seq4707 91.5 1e-13 seq6389 86.0 4e-12 seq2305 84.2 2e-11 >seq810 Length=26514 Score = 105 bits (116), Expect = 5e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || |||||| | ||||| ||| || || ||||||| ||| | Sbjct 7516 ATGCAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACCCTTGATGTAGAACCATCT 7575 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || || |||||||| || ||||||||||| |||| || || Sbjct 7576 GATACTATTGAAAACGTAAAACAAAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAA 7635 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG--CAGCTTGTCCGATTACA 27967 ||||| | || ||||| || ||||||||||| || | ||| || | || || |||| Sbjct 7636 CAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACGTACACTTAGT--GACTACA 7693 Query 27968 ACATCCAAAAAGAGAGC-ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| ||||| ||||| || || ||| | ||||| || Sbjct 7694 ACATCCAAAAAGA-AGCAACTTTACATTTAGTATTACGTCTTCGTGGAGG 7742 >seq4707 Length=625 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 27864 GGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTT 27923 |||||| ||||| || ||||||||||| |||| || || ||||| | || || Sbjct 250 GGTCAAGCAAAAGATCCAAGACAAAGAAGGAATTCCTCCAGATCAACAACGTCTTATCTT 309 Query 27924 TGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAG 27983 ||| || ||||||||||| || | ||| | | || ||||| || ||||||||||| || Sbjct 310 TGCTGGTAAACAATTGGAAGATGGACGTACTCTTTCTGATTATAATATCCAAAAAGA-AG 368 Query 27984 C-ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || | ||||| || |||||||| ||||| || Sbjct 369 CAACCCTTCATTTAGTATTGCGTTTACGTGGTGG 402 >seq6389 Length=961 Score = 86.0 bits (94), Expect = 4e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 || |||||||| || || |||||||| |||| || || ||||| || || || Sbjct 164 GTGAAACAAAAGATCCAAGATAAAGAAGGGATTCCACCAGACCAACAACGATTGATATTC 105 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || || |||||||| || || | ||| | || | ||||| || || |||||||| Sbjct 104 GCAGGTAAACAATTAGAAGATGGACGTACATTAGCTGATTATAATATTCAAAAAGAATCT 45 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||| ||||||||||| ||||| || Sbjct 44 ACGTTGCATTTAGTTTTGCGTTTACGTGGTGG 13 >seq2305 Length=8964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/156 (74%), Gaps = 6/156 (4%) Strand=Plus/Plus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 || |||||||||||| || ||||||||| | || || || ||||| || || ||| Sbjct 1393 GTTAAACAAAAAATACAAGATAAAGAAGGTATCCCACCAGATCAACAACGTTTGATATTT 1452 Query 27925 GCCGGAAAACAATTGGACGACGAACG--CAGCTTGTCCGATTACAACATCCAAAAAGAGA 27982 || || ||||||||||| || | || || | || || ||||| || |||||||| | Sbjct 1453 GCAGGCAAACAATTGGAAGATGGGCGTACACTTAGT--GACTACAATATTCAAAAAGA-A 1509 Query 27983 GC-ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || || |||||||| ||||| | || ||||| ||| Sbjct 1510 GCAACATTGCATTTAGTTTTAAGATTACGTGGTGGC 1545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355822733130342