Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq810 154 3e-32 seq775 134 3e-26 seq4707 123 6e-23 seq6389 105 2e-17 >seq810 Length=26514 Score = 154 bits (170), Expect = 3e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | || | ||| | |||||||||||||| || || ||| Sbjct 7740 TCCACGAAGACGTAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTAAG 7681 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||||||||| || || ||||| |||||||| |||||||| || || |||| Sbjct 7680 TGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAAT 7621 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||| ||||| || ||||||||||| |||||||| || || ||||| ||| || || Sbjct 7620 TCCTTCTTTGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACATC 7561 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || || || | ||| ||||| || | ||||| Sbjct 7560 AAGGGTGATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCAT 7516 >seq775 Length=28483 Score = 134 bits (148), Expect = 3e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||||| || || ||||| |||||||| |||||||| || || |||| |||||| Sbjct 10622 TCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTC 10563 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||| |||||||||||||| |||||||| || || ||||| ||| || || ||||| Sbjct 10562 TTTGTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGT 10503 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || | || ||||| || | ||||| Sbjct 10502 GATGGTTTTACCAGTCAATGTTTTTACGAAAATTTGCAT 10464 Score = 91.5 bits (100), Expect = 3e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983 ||||||||||| |||||||| | |||||| | ||||||||||| || || ||||| ||| Sbjct 10789 TCTTTTTGGATATTATAATCAGAAAGGGTACGTCCATCTTCCAATTGTTTACCTGCAAAG 10730 Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAA 211008 ||||| |||||||| || || |||| Sbjct 10729 ATAAGACGTTGTTGATCTGGTGGAA 10705 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||||| || || ||||| |||||||| |||||||| || || |||| |||||| Sbjct 10702 TCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTC 10643 Query 211016 CTTGTCCTGGATCTTTT 211032 ||||| |||||||||| Sbjct 10642 TTTGTCTTGGATCTTTT 10626 >seq4707 Length=625 Score = 123 bits (136), Expect = 6e-23 Identities = 104/128 (81%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || | ||||||||||| |||||||| | ||| || | ||||||||||| || Sbjct 378 TGAAGGGTTGCTTCTTTTTGGATATTATAATCAGAAAGAGTACGTCCATCTTCCAATTGT 319 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || |||||||| |||||||| || ||||||| |||||| ||||| ||||||||| Sbjct 318 TTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGGATCTTT 259 Query 211032 TGTTTCAC 211039 || || || Sbjct 258 TGCTTGAC 251 >seq6389 Length=961 Score = 105 bits (116), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || |||||||| || |||||||| || | || | ||||||||| | || || ||| Sbjct 43 GTAGATTCTTTTTGAATATTATAATCAGCTAATGTACGTCCATCTTCTAATTGTTTACCT 102 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | ||||||||||| || |||| ||||| || || ||||||||||||||| Sbjct 103 GCGAATATCAATCGTTGTTGGTCTGGTGGAATCCCTTCTTTATCTTGGATCTTTTGTTTC 162 Query 211038 ACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| || |||| || || ||||| || || ||||| || | | Sbjct 163 ACACGCGAAATGGTATC---GCTTGCCTCTGTATCTAGAGTAATTGTTTTTCCAGTTAAA 219 Query 211095 GTCTTTACAAACA 211107 || |||||| ||| Sbjct 220 GTTTTTACATACA 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159016166946290