Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq810 152 3e-32 seq2305 141 6e-29 seq734 131 1e-25 seq775 111 1e-19 seq6389 98.7 7e-16 seq4160 95.1 8e-15 seq4707 84.2 1e-11 seq3001 84.2 1e-11 >seq810 Length=26514 Score = 152 bits (168), Expect = 3e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| | || || ||||| ||||| || || || || | | Sbjct 7516 ATGCAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACCCTTGATGTAGAACCATCT 7575 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| |||||||||| ||| ||||||||||| | || ||||||||| Sbjct 7576 GATACTATTGAAAACGTAAAACAAAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAA 7635 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || |||||| ||||||| | ||| || | | || |||||| Sbjct 7636 CAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACGTACACTTAGTGACTACAAC 7695 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| | || ||||||||||| ||| | | || ||||| Sbjct 7696 ATCCAAAAAGAAGCAACTTTACATTTAGTATTACGTCTTCGTGGAGG 7742 >seq2305 Length=8964 Score = 141 bits (156), Expect = 6e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || ||||| ||||| || || || || | | || ||| |||||| | |||||| Sbjct 1342 ACTGGGAAAACCATCACGCTTGATGTAGAACCGTCTGATACTATTGAAAACGTTAAACAA 1401 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 ||||| || ||||||||| | || ||||||||||| ||||| |||||||| |||||| Sbjct 1402 AAAATACAAGATAAAGAAGGTATCCCACCAGATCAACAACGTTTGATATTTGCAGGCAAA 1461 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 ||| ||||||| | || || | | || ||||| || |||||||| | ||||| ||| Sbjct 1462 CAATTGGAAGATGGGCGTACACTTAGTGACTACAATATTCAAAAAGAAGCAACATTGCAT 1521 Query 23815 TTAGTTTTAAGGTTGCGAGGAGG 23837 ||||||||||| || || || || Sbjct 1522 TTAGTTTTAAGATTACGTGGTGG 1544 >seq734 Length=33368 Score = 131 bits (144), Expect = 1e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 23616 GATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACAC 23675 ||| || || |||||| | || || ||||| |||||||| ||| || || || || Sbjct 10320 GATATTTGTAAAAACCTTGACTGGTAAAACCATCACTCTTTTTGTTCCTTCAACAGATAC 10379 Query 23676 TGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCG 23735 |||||| |||| |||||| || ||||||||| | || ||||||||||| || Sbjct 10380 AATTGAAAATACAAAATTAAAAATACAAGATAAAGAAGGTATTCCACCAGATCAACAACG 10439 Query 23736 TTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACA 23795 ||| |||||||| || || ||||| ||||| | || || ||| |||||| || ||||| Sbjct 10440 TTTGATATTTGCAGGTAAGCAACTAGAAGATGGTCGTACATTATCCGATTATAATATACA 10499 Query 23796 AAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | | || || ||| |||||||| ||| | ||||| ||||| Sbjct 10500 AGAGGAAGCCGTATTGCATTTAGTATTACGTTTGCGTGGAGG 10541 >seq775 Length=28483 Score = 111 bits (122), Expect = 1e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| | || || ||||| |||||||| || || || | | Sbjct 10464 ATGCAAATTTTCGTAAAAACATTGACTGGTAAAACCATCACTCTTGATGTAGAACCATCT 10523 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | |||||||| || ||||||||||| | || ||||||||| Sbjct 10524 GATACTATTGAAAACGTTAAACAAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAA 10583 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG 23771 || ||| | || ||||| || |||||| ||||||| | ||| Sbjct 10584 CAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACG 10624 >seq6389 Length=961 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 23689 AAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCC 23748 |||||||| || || |||||||| | || ||||| ||||| || || ||||| || Sbjct 161 AAACAAAAGATCCAAGATAAAGAAGGGATTCCACCAGACCAACAACGATTGATATTCGCA 102 Query 23749 GGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACA 23808 || |||||| | ||||| | ||| || |||| ||||| || || |||||||| || || Sbjct 101 GGTAAACAATTAGAAGATGGACGTACATTAGCTGATTATAATATTCAAAAAGAATCTACG 42 Query 23809 TTACATTTAGTTTT 23822 || ||||||||||| Sbjct 41 TTGCATTTAGTTTT 28 >seq4160 Length=5066 Score = 95.1 bits (104), Expect = 8e-15 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 23618 TTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTG 23677 |||| |||||||| | || || ||||| |||||||| || || || | | || || Sbjct 874 TTTTTGTTAAAACTTTAACTGGTAAAACCATCACTCTTGATGTAGAACCATCTGATACAA 933 Query 23678 TTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGT 23736 ||| |||||| |||||||||||| || ||||||||| | || |||| |||||| ||| Sbjct 934 TTGCAAATAT-AAAACAAAAAATACAAGATAAAGAAGGTATCCCTCCAGGTCAACAACGT 992 Query 23737 TTAATATTTGCCGGCAAACAACTGGAAGA 23765 || |||| ||| || |||| ||||||| Sbjct 993 TTGATATATGCGGGACTACAATTGGAAGA 1021 >seq4707 Length=625 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||||||||| | || ||||||||||| ||| | || ||||| || |||||| ||||| Sbjct 269 GACAAAGAAGGAATTCCTCCAGATCAACAACGTCTTATCTTTGCTGGTAAACAATTGGAA 328 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || | ||| ||| | ||||| || || |||||||| | || | |||||||| || Sbjct 329 GATGGACGTACTCTTTCTGATTATAATATCCAAAAAGAAGCAACCCTTCATTTAGTATT 387 >seq3001 Length=6688 Score = 84.2 bits (92), Expect = 1e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| ||||||| | | || || |||| ||| | || || | | Sbjct 4239 AAGATGCAGATTTTTGTTAAAAATTTAAGAGGCAAGACGACCACCTTGGATGTGGTAGCG 4298 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||||||||||| | || || | |||| || ||||||||| | | ||| | Sbjct 4299 TCTGACACTGTTGAAAATGTTAAGCAGAGAATTCAAGAAAAAGAAGGTATCGCTCCAAGT 4358 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| |||||| |||| || |||||| ||||||| ||||||| |||||| Sbjct 4359 CAACAAATTTTAATCCTTGCTGGGAAACAATTGGAAGATACTTGCACTTTGTCTGATTAC 4418 Query 23788 AACATACAAAAAGA 23801 || || ||||||| Sbjct 4419 AATATTGAAAAAGA 4432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337971923126168