Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq810 127 5e-24 seq775 118 3e-21 seq6389 114 3e-20 seq4707 114 3e-20 seq671 86.0 1e-11 >seq810 Length=26514 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| | ||||||||||| ||||| || | || | |||||||| | || || || Sbjct 7713 AGTTGCTTCTTTTTGGATGTTGTAGTCACTAAGTGTACGTCCATCTTCCAATTGTTTACC 7654 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 || |||||||| |||||||| || || ||||| ||||| |||||||| |||||||| || Sbjct 7653 TGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGAATCTTTTGTTT 7594 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || ||| || || || || | ||| || || | ||||| || || || |||||||| Sbjct 7593 TACGTTTTCAATAGTATCAGATGGTTCTACATCAAGGGTGATGGTTTTACCAGTCAAAGT 7534 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| ||| | |||||| Sbjct 7533 TTTTACGAAAATTTGCAT 7516 >seq775 Length=28483 Score = 118 bits (130), Expect = 3e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| | || || || || |||||||| |||||||| || || ||||| ||||| Sbjct 10621 CCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCT 10562 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||||||||||||||| || || ||| || || || || | ||| || || | ||| Sbjct 10561 TTGTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTG 10502 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || ||||| ||||||| ||| | |||||| Sbjct 10501 ATGGTTTTACCAGTCAATGTTTTTACGAAAATTTGCAT 10464 >seq6389 Length=961 Score = 114 bits (126), Expect = 3e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | ||| ||||| || || || | |||||||||| || || || Sbjct 43 GTAGATTCTTTTTGAATATTATAATCAGCTAATGTACGTCCATCTTCTAATTGTTTACCT 102 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || | |||||||||||| || ||||| ||||| || |||||||||||||| ||| Sbjct 103 GCGAATATCAATCGTTGTTGGTCTGGTGGAATCCCTTCTTTATCTTGGATCTTTTGTTTC 162 Query 225637 ACA 225639 ||| Sbjct 163 ACA 165 >seq4707 Length=625 Score = 114 bits (126), Expect = 3e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || | ||||||||||| ||| ||||| | | ||| | |||||||| | || Sbjct 378 TGAAGGGTTGCTTCTTTTTGGATATTATAATCAGAAAGAGTACGTCCATCTTCCAATTGT 319 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| |||||||| |||||||| || || ||||| ||||| ||||||||||||||| Sbjct 318 TTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGGATCTTT 259 Query 225631 TGCTTCAC 225638 ||||| || Sbjct 258 TGCTTGAC 251 >seq671 Length=43938 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||| ||||| || |||||||| || || || || || || |||||||| Sbjct 5467 GAAAATTTGTCCATCGGTAATGGAAATAACATTGGTTGGAATGTATGCCGATACATCACC 5408 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAA 4576 ||||||||||| | ||| || |||| || | || ||| |||||| Sbjct 5407 AGCTTGTGTTTCAATAACTGGCAAGGAGGTCAAGGAACCAGCACCAA 5361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192391455467324