Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq2305 96.9 3e-15 seq810 91.5 1e-13 seq6389 82.4 6e-11 >seq2305 Length=8964 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/156 (74%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| || || |||||||| || | ||||| |||| |||||||||||||||||| || Sbjct 1546 TGCCACCACGTAATCTTAAAACTAAATGCAATGTTGCTTCTTTTTGAATATTGTAGTCA- 1488 Query 101070 CCATAGTTTTGGA--ATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTAC 101127 | ||| | | |||||||||||||||||| ||| |||| | | |||||| ||| Sbjct 1487 -CTAAGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGG 1429 Query 101128 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCAC 101163 || | |||||||| || ||||||||||| || Sbjct 1428 TGGGATACCTTCTTTATCTTGTATTTTTTGTTTAAC 1393 >seq810 Length=26514 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/222 (70%), Gaps = 11/222 (5%) Strand=Plus/Minus Query 101036 TGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--ATCTTCCAATT 101093 || ||||||| ||||||||| || ||||| || | ||| | | ||||||||||| Sbjct 7718 TGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCA--CTAAGTGTACGTCCATCTTCCAATT 7661 Query 101094 GTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTT 101153 |||| || ||| | ||||| | |||||| ||| || | ||||||||||| ||| | Sbjct 7660 GTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGAATCT 7601 Query 101154 TTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT--TTCGACGGTAATAGTTTTGCC 101211 ||||||| || | | | || || | | ||| | || | ||| || ||||| || Sbjct 7600 TTTGTTTTACGTTTTCAATAGTATCAGATG--GTTCTACATCAAGGGTGATGGTTTTACC 7543 Query 101212 CGTCAATGTTTTAATAAAAATTTGC---ATTATTACAATATA 101250 ||||| ||||| | ||||||||| || |||| |||||| Sbjct 7542 AGTCAAAGTTTTTACGAAAATTTGCATGATGATTATAATATA 7501 >seq6389 Length=961 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 101036 TGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGT 101095 ||||| || ||||||||||||||||| ||||| || | || |||||| |||||| Sbjct 37 TGCAACGTAGATTCTTTTTGAATATTATAATCAGCTAATGTACGTCCATCTTCTAATTGT 96 Query 101096 TTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTT 101155 || || || |||| | | |||||||||| || | |||||||| || || ||| Sbjct 97 TTACCTGCGAATATCAATCGTTGTTGGTCTGGTGGAATCCCTTCTTTATCTTGGATCTTT 156 Query 101156 TGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTC 101215 ||||||||| | | || || | | | ||| || | ||||| ||||| || || Sbjct 157 TGTTTCACACGCGAAATGGTATCGCTTGCCTCTGTATCTAGAGTAATTGTTTTTCCAGTT 216 Query 101216 AATGTTTT 101223 || ||||| Sbjct 217 AAAGTTTT 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409615136390814