Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq8698 194 1e-44 >seq8698 Length=1787 Score = 194 bits (214), Expect = 1e-44 Identities = 590/895 (66%), Gaps = 35/895 (4%) Strand=Plus/Plus Query 4244 ACAAACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTC 4303 || ||||||| |||| |||||| ||| || ||||| || || || ||||| |||| Sbjct 897 ACCAACACCAGCTTTTGAATATTCGCCTACACGTTTTTCAAAAAAGTTGGTTTTACCTTG 956 Query 4304 TAACGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTTTTTCACACT 4362 || || || ||||||| |||| || || || | ||| ||||| || || |||| Sbjct 957 CAAGGAGATCATTTCCATCCAATCGAATGGGTTGGATGCATTGTACATTTTAGATACACC 1016 Query 4363 TTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGT 4422 | | ||| | ||| || ||||| ||||| || || |||| ||| | | ||| Sbjct 1017 TAAT-GCTTGTAACAAACGATCAGCGCAGAATTCAATGTATTGGCACATCAATGTTGAGT 1075 Query 4423 TAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGG 4482 | || ||||| ||| || |||| | | | | ||| ||| ||| || || | Sbjct 1076 TCATGCCAATCAATTCAACTGGTAATGATTGGGAGACAAATACTTTTTCGATTTCAACCG 1135 Query 4483 CTT---CTGTGATTATATCTTTTATTTTATCTT-TAGATGGTTTATTTACTAAGT-ATCC 4537 | | | ||||| || | ||| ||| || | | ||||||||| | ||| Sbjct 1136 CATTGCCGATGATTGAATGAATCGTTTCCTCTGGTAAACG----ATTTACTAAATGATCT 1191 Query 4538 AA--ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTA 4595 | ||||| || || |||||||||||||||||||| || | ||||| |||||| Sbjct 1192 TTGTATAATAAGCATGCGAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTT 1251 Query 4596 GAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCA---AAT 4652 ||||| ||| || ||||| | ||| | ||||| | |||||| | ||||| || Sbjct 1252 GAAAAACATAAACCTGGCATCATACCACGTTTTTTTAACCAAAACA---CGGCACAGAAG 1308 Query 4653 GACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAG 4712 || ||| ||||| || ||||| || || || || || | || ||||||| Sbjct 1309 GAACCACTGAAGAAGATACCTTCACACGCAGCGAATGCAACGACGCGCTCTGCGAACGAT 1368 Query 4713 CTGGCTTTGTCT---TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACG-CACGG 4768 || |||||| || |||| || ||| | ||||||| || ||| || | Sbjct 1369 ---GCGTTGTCTGCGTTGGTCCAACGCAAGCACCATTCTGCTTTTTCTTTGACGGCATCG 1425 Query 4769 AATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTT---GAATATAAGT 4825 | |||| | ||||| || || || ||||||| ||| | | |||| ||||| Sbjct 1426 A-TTGTATCAATAGCATTCAACAAACGCGTTTTTTC---TGGACCATTACGAATGTAAGT 1481 Query 4826 GTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA 4885 |||||||| | | ||||| ||| | ||| |||||||| ||||| || ||||| || || Sbjct 1482 GTCTATTAACAAGGAATACACTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATA 1541 Query 4886 AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAA-TCTTTCTACTAAGTTTTCGT 4944 || || | ||||| | ||||| |||||||| |||| | || || || ||||||| Sbjct 1542 GAAACAACGTGCTTCAGGCACTTGCACTTCGTTGGAAAAGTTCATCAAC-AAATTTTCGT 1600 Query 4945 TTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGT 5004 |||| |||||||| || || ||||| ||||| || | || ||||| |||||| Sbjct 1601 TTACAATACCGTCGGATGCAGCGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGT 1660 Query 5005 CAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCC 5064 | | | ||| | ||| | | ||||| | || || | ||||| |||||| Sbjct 1661 TATCGCTCATTTTATCCCAATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCC 1720 Query 5065 AAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 | || || ||||| |||||||| ||||| |||||||||| || ||||| || Sbjct 1721 AGAAAGATGCTTCAGCTTTTTTATACATTTGCCAAATATCATTATGTTGAATTGG 1775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427001998115618