Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq888 390 1e-103 >seq888 Length=1579 Score = 390 bits (432), Expect = 1e-103 Identities = 500/689 (73%), Gaps = 0/689 (0%) Strand=Plus/Minus Query 186285 ATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCGTCTCGTAGGTATCCGTCCATACAAT 186344 || || || ||||| || || |||||||| ||| ||| || ||||| ||||| Sbjct 1575 ATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACAAC 1516 Query 186345 GCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTT 186404 || ||||| || || | |||||| ||||| || || ||||||||| || ||||| ||| Sbjct 1515 GCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCACTT 1456 Query 186405 GGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTG 186464 |||||||| ||||||||| || || || || || || || | ||| || | || | Sbjct 1455 GGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTATC 1396 Query 186465 TTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCA 186524 | ||| ||||||| |||||||||||||| | || | ||||||||||||||||||||| Sbjct 1395 CTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAGCT 1336 Query 186525 GGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTT 186584 || | ||||| | || || || | ||||| || |||| || |||||||| || ||| Sbjct 1335 GGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACACTT 1276 Query 186585 TATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAA 186644 | |||||||| || ||||||||||| || || | | || |||| ||||| Sbjct 1275 TTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGAG 1216 Query 186645 ACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGC 186704 || || || ||||| || || ||| | |||||||||||||| ||||| | || || Sbjct 1215 ACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTCTCA 1156 Query 186705 AATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGGACCTCT 186764 || |||||||||||||| ||||||||||| || || ||||| | || | |||| || Sbjct 1155 AACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATGTCA 1096 Query 186765 TCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACTTTGTAAGTCAGGAG 186824 | |||| || |||| | || |||||| ||||| || || || ||| || ||| Sbjct 1095 GCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAAGAG 1036 Query 186825 GTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAATATCCTATTGAAT 186884 | | || || || ||||||||||| || || ||||| || |||||||| || | || Sbjct 1035 ATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTTAAC 976 Query 186885 GAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAAACTTTGTATTTCCT 186944 |||||| | ||||| ||||||||| | ||||| |||||||||||| ||||||| ||| Sbjct 975 GAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTCCCT 916 Query 186945 GAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 || || || | ||| | || |||||||| Sbjct 915 GAGGAGGTACTTCCACGTGGAAACGCTCT 887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621999281801520