Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq888 416 3e-111 >seq888 Length=1579 Score = 416 bits (460), Expect = 3e-111 Identities = 508/693 (73%), Gaps = 0/693 (0%) Strand=Plus/Minus Query 165477 ATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTATTCGTCCTTACAAT 165536 || || || |||||||| || |||||| | ||||| | |||||||| ||||| Sbjct 1575 ATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACAAC 1516 Query 165537 GCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTG 165596 || ||||| ||||| | |||||||||||||||||| ||| || ||||| || || || Sbjct 1515 GCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCACTT 1456 Query 165597 GGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTG 165656 ||||| || |||||||| ||||| || ||||| || || | ||| ||||| || | Sbjct 1455 GGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTATC 1396 Query 165657 CTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCA 165716 || ||| ||||||||||||| |||||||| || || | || ||||||||||| ||||| Sbjct 1395 CTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAGCT 1336 Query 165717 GGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTG 165776 || | | || | |||| | |||| ||| ||||| |||| |||||||| || || | Sbjct 1335 GGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACACTT 1276 Query 165777 TATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAA 165836 | ||||||||||| ||||||| ||| || ||| | || || | || || Sbjct 1275 TTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGAG 1216 Query 165837 ACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGC 165896 ||||| || ||||| || ||||||||||||||||| |||||||| ||| | || ||| Sbjct 1215 ACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTCTCA 1156 Query 165897 AATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGT 165956 || |||||||||||||||||||| ||||| || || ||||| | ||| | |||| Sbjct 1155 AACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATGTCA 1096 Query 165957 TCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAG 166016 | ||||| | |||| | ||| || || ||||| || ||||| || || || ||| Sbjct 1095 GCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAAGAG 1036 Query 166017 ATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAAT 166076 || | |||||||| ||||| ||||||||||| ||||| || || || || || ||||| Sbjct 1035 ATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTTAAC 976 Query 166077 GAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCT 166136 ||||| | ||||| ||| |||| || ||| || || ||||| ||| |||| |||||| Sbjct 975 GAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTCCCT 916 Query 166137 GAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 || || || | ||| | || ||||| |||||| Sbjct 915 GAGGAGGTACTTCCACGTGGAAACGCTCTTTAA 883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557590646160720