Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq810 129 5e-25 seq4707 109 5e-19 seq6389 102 7e-17 seq775 98.7 8e-16 seq1282 87.8 2e-12 seq2305 84.2 2e-11 >seq810 Length=26514 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || ||||| ||||| || |||||||| ||| | || ||||| Sbjct 7516 ATGCAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACCCTTGATGTAGAACCATCT 7575 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | ||||||||||| ||| ||||||||||| |||| |||||| Sbjct 7576 GATACTATTGAAAACGTAAAACAAAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAA 7635 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 ||| | ||||| | ||| || ||||||||||||||| | | ||| | || || | Sbjct 7636 CAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACGTACACTTAG--TGACTACA 7693 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | || ||||||||| | || |||||||||| || ||||| || || || Sbjct 7694 ACATCCAAAAAGAAGCAACTTTACATTTAGTATTACGTCTTCGTGGAGG 7742 >seq4707 Length=625 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 111172 CAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATT 111231 ||||| || ||||| || ||||||||||| |||| ||||||||| | ||||| Sbjct 248 CAGGTCAAGCAAAAGATCCAAGACAAAGAAGGAATTCCTCCAGATCAACAACGTCTTATC 307 Query 111232 TATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAA 111291 | ||| || ||||||||||||||| ||| | | ||||||||||| ||||||||| Sbjct 308 TTTGCTGGTAAACAATTGGAAGATGGACGTACTCTTTCTGATTATAATATCCAAAAAGAA 367 Query 111292 TCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | || || |||||||| |||||| | || ||||| Sbjct 368 GCAACCCTTCATTTAGTATTGCGTTTACGTGGTGG 402 >seq6389 Length=961 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 111111 TGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTTGG 111170 ||| ||||| || || || ||||| ||||| | || || || | |||||| | || Sbjct 228 TGTAAAAACTTTAACTGGAAAAACAATTACTCTAGATACAGAGGCAAGCGATACCATTTC 169 Query 111171 CCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTAT 111230 | || |||||||| || || |||||||| |||| || |||||| | | || Sbjct 168 GCGTGTGAAACAAAAGATCCAAGATAAAGAAGGGATTCCACCAGACCAACAACGATTGAT 109 Query 111231 TTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGA 111290 | || || |||||||| |||||| || | || ||||||||||| |||||||| Sbjct 108 ATTCGCAGGTAAACAATTAGAAGATGGACGTACATTAGCTGATTATAATATTCAAAAAGA 49 Query 111291 ATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||||| | |||||||| |||||| | || ||||| Sbjct 48 ATCTACGTTGCATTTAGTTTTGCGTTTACGTGGTGG 13 >seq775 Length=28483 Score = 98.7 bits (108), Expect = 8e-16 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 111094 TTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAA 111153 |||| ||||||||||| || ||||| ||||| || |||||||| || | || ||| Sbjct 10458 TTAATCATGCAAATTTTCGTAAAAACATTGACTGGTAAAACCATCACTCTTGATGTAGAA 10517 Query 111154 CCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC 111213 || ||| || ||| | || |||||||| || ||||||||||| |||| Sbjct 10518 CCATCTGATACTATTGAAAACGTTAAACAAAAGATCCAAGACAAAGAAGGAATTCCACCA 10577 Query 111214 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT 111255 ||||||||| | ||||| | ||| || ||||||||||||||| Sbjct 10578 GATCAACAACGTCTTATCTTTGCAGGTAAACAATTGGAAGAT 10619 >seq1282 Length=23488 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGA--ACCCA 111157 |||||| | ||||| ||||||||||| || ||||| || || |||| || | || | Sbjct 1073 ATGCAATTCTTTGTTAAAACGTTGACTGGTAAAACAATCACTTTGGA--CGTATTACAAA 1130 Query 111158 GCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATC 111217 || | ||| | |||||| ||| ||| | |||||||| ||| |||| Sbjct 1131 ATGAATTGATTGCAGATGTAAAATTAAAGATTCAAAAGAAAGAAGGATGTCCACCAGATC 1190 Query 111218 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111277 ||||| | |||||| ||| || | |||||||||||| | || | ||||||| | Sbjct 1191 AACAACGAATTATTTTTGCAGGTTATCAATTGGAAGATACGCGTACATTATCCGATTACA 1250 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | || ||||||||| |||| | |||||||| || || || || || || Sbjct 1251 ACATTCAAAAAGAAGCTACCGTCCATTTAGTATTACGACTTCGTGGAGG 1299 >seq2305 Length=8964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/226 (69%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 111106 ATTTTTGTCAAA-ACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTC 111164 ||| || ||| | || ||||| || |||||||| || | || ||||| ||| | Sbjct 1323 ATTATTATCATAGACATTGACTGGGAAAACCATCACGCTTGATGTAGAACCGTCTGATAC 1382 Query 111165 TGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAG 111224 | ||| | || ||||||||||| || |||||||| | || ||||||||| | Sbjct 1383 TATTGAAAACGTTAAACAAAAAATACAAGATAAAGAAGGTATCCCACCAGATCAACAACG 1442 Query 111225 GCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATAATATA 111282 | || | ||| |||||||||||||||||| | | ||| | || || ||||| Sbjct 1443 TTTGATATTTGCAGGCAAACAATTGGAAGATGGGCGTACACTTAG--TGACTACAATATT 1500 Query 111283 CAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 ||||||||| | ||| | |||||||| || | | || ||||||| Sbjct 1501 CAAAAAGAAGCAACATTGCATTTAGTTTTAAGATTACGTGGTGGCA 1546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421764182023696