Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq888 466 2e-126 >seq888 Length=1579 Score = 466 bits (516), Expect = 2e-126 Identities = 519/690 (75%), Gaps = 2/690 (0%) Strand=Plus/Minus Query 179163 ATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACGTCTAGTCGGTATTCGTCCTTACAAT 179222 || || || |||||||| || |||||||| |||||| ||| |||||||| ||||| Sbjct 1575 ATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACAAC 1516 Query 179223 GCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTC 179282 ||||| ||||| || | ||| |||||||| || || ||||| || || || || || || Sbjct 1515 GCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCACTT 1456 Query 179283 GGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTA 179342 |||||||| ||||||||||| || || || || || || | |||||||| || | Sbjct 1455 GGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTATC 1396 Query 179343 CTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCA 179402 || ||| | || || |||||||||||||| || |||| |||||||||||||||||||| Sbjct 1395 CTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAGCT 1336 Query 179403 GGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTC 179462 || | || || | |||| | |||||||| ||||| ||||| |||||||| |||||||| Sbjct 1335 GGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACACTT 1276 Query 179463 TTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAG 179522 || ||||| |||| ||||| |||||| || || | || ||||||| || ||| Sbjct 1275 TTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGAG 1216 Query 179523 ACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGC 179582 || || || ||||| || || |||||||||||||| ||||| || ||| | || ||| Sbjct 1215 ACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTCTCA 1156 Query 179583 AATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCT 179642 || ||||||||||| || ||||| ||| | || || ||||| | || | |||| || Sbjct 1155 AACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATGTC- 1097 Query 179643 AGCA-TTGGTATTATTGGTCTTGCACTTAACCTTAGAGCTTATGACTTTGTTTCACAAGA 179701 |||| ||||| || |||| | ||| |||||| | || || || || || || ||||| Sbjct 1096 AGCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAAGA 1037 Query 179702 GATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAA 179761 |||| | || || || ||||||||||| || || ||||| || ||||| || || | || Sbjct 1036 GATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTTAA 977 Query 179762 TGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCC 179821 |||||| | ||||| ||||||||| | ||||| |||||||||||| ||||||| || Sbjct 976 CGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTCCC 917 Query 179822 TGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 ||| || ||| | ||| | || |||||||| Sbjct 916 TGAGGAGGTACTTCCACGTGGAAACGCTCT 887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596239027179360