Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq888 417 1e-111 >seq888 Length=1579 Score = 417 bits (462), Expect = 1e-111 Identities = 512/697 (73%), Gaps = 4/697 (1%) Strand=Plus/Minus Query 170919 ATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCGTCTCGTAGGGATTAGACCGTACAAT 170978 || || || |||||||| || |||||||| ||| ||| ||| | |||||||| Sbjct 1575 ATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACAAC 1516 Query 170979 GCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATCTATCCTCTT 171038 ||||| || ||||| | |||||| ||||| || || || ||||| || || || ||| Sbjct 1515 GCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCACTT 1456 Query 171039 GGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTG 171098 || |||||| | |||||||| |||||||| || || || || | ||| ||||| || | Sbjct 1455 GGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTATC 1396 Query 171099 CTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTTGCA 171158 || ||| | ||||| ||||||||||||||||| || | ||| || ||||||||||| || Sbjct 1395 CTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAGCT 1336 Query 171159 GGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTG 171218 || | || || | ||| | |||| ||||||||| |||| |||||||| || || | Sbjct 1335 GGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACACTT 1276 Query 171219 TATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAG 171278 | |||||||||||| ||||||| || || ||| || | || || | |||||| Sbjct 1275 TTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGAG 1216 Query 171279 ACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGC 171338 || || || ||||| || ||||| ||||||||||| |||||||| ||| | || ||| Sbjct 1215 ACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTCTCA 1156 Query 171339 AATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGG--GTCA 171396 || ||||||||| | || ||||| ||||| || || ||||| | || | ||| |||| Sbjct 1155 AACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATGTCA 1096 Query 171397 GTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGATTTCGTAAGTCAGG 171456 | | || || || |||| | || ||| || | || || ||||||||| || | Sbjct 1095 GCA--CTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAAG 1038 Query 171457 AGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGA 171516 || || | || || |||||||| ||||| || || ||||| || ||||| || || | | Sbjct 1037 AGATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTTA 978 Query 171517 ATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAAAACTTTGTGTTCC 171576 | |||||| ||||||||||||||||| | ||| || |||||||||||| |||| |||| Sbjct 977 ACGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTCC 918 Query 171577 CAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGATT 171613 | ||||| || || || ||||| || || |||| ||| Sbjct 917 CTGAGGAGGTACTTCCACGTGGAAACGCTCTTTAATT 881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592130696917920