Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq810 176 9e-39 seq2305 123 5e-23 seq775 123 5e-23 seq4707 105 1e-17 seq6389 104 5e-17 seq2286 102 2e-16 >seq810 Length=26514 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || | ||| | |||||| || |||||||||||||||||||||| | Sbjct 7742 CCTCCACGAAGACGTAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTA 7683 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || | |||||| || |||||||| | ||||||||| || ||| Sbjct 7682 AGTGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGA 7623 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || |||||||| |||||| ||||||| | || ||||| || || | ||| || Sbjct 7622 ATTCCTTCTTTGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACA 7563 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || ||||| |||||||| || ||||| || ||||| Sbjct 7562 TCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCAT 7516 >seq2305 Length=8964 Score = 123 bits (136), Expect = 5e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||||||||| || ||||||||| ||| || || ||||| || | |||||| || ||||| Sbjct 1509 TTCTTTTTGAATATTGTAGTCACTAAGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAA 1450 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||||||||||| || || ||||| || || ||||| || ||| ||| ||| | Sbjct 1449 TATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGTATTTTTTGTTTAACGTT 1390 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCT 283083 || ||||| || || | ||| || || || ||||| || || || ||||| |||| Sbjct 1389 TTCAATAGTATCAGACGGTTCTACATCAAGCGTGATGGTTTTCCCAGTCAATGTCT 1334 >seq775 Length=28483 Score = 123 bits (136), Expect = 5e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 282939 CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCC 282998 || ||||| || | |||||| || |||||||| | ||||||||| || ||||| || Sbjct 10624 CGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCT 10565 Query 282999 TCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGA 283058 || ||||||||||||||| ||| ||| | || ||||| || || | ||| || || ||| Sbjct 10564 TCTTTGTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGA 10505 Query 283059 GTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || ||||| ||||| || || ||||| || ||||| Sbjct 10504 GTGATGGTTTTACCAGTCAATGTTTTTACGAAAATTTGCAT 10464 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| | |||||||| | |||||| || |||||||||||| || || |||| | Sbjct 10825 CCTCCACGTAAACGAAGTACTAAATGTAAGGTTGCTTCTTTTTGGATATTATAATCAGAA 10766 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || || || ||||| || | |||||| || |||||||| | ||||||||| || Sbjct 10765 AGGGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATC 10713 >seq4707 Length=625 Score = 105 bits (116), Expect = 1e-17 Identities = 114/150 (76%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| | || | ||| | ||| | || |||||||||||| || || |||| Sbjct 403 ACCACCACGTAAACGCAATACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCAGA 344 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || | |||||| || |||||||| | ||||||||| || || Sbjct 343 AAGAGTACGTCCATCTTCCAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGG 284 Query 282992 AATACCCTCCTTGTCTTGGATC-TTTGCTT 283020 ||| || || |||||||||||| ||||||| Sbjct 283 AATTCCTTCTTTGTCTTGGATCTTTTGCTT 254 >seq6389 Length=961 Score = 104 bits (114), Expect = 5e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 282865 AACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGT 282924 ||| || ||||||||| | || | || | ||| ||||| ||||||||| || || | Sbjct 5 AACCTGGACCACCACGTAAACGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTAT 64 Query 282925 AGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGT 282984 | ||||| | || || ||||| |||| |||||| || || || ||||| |||||||||| Sbjct 65 AATCAGCTAATGTACGTCCATCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGT 124 Query 282985 CACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 | ||||| || || || |||||||||||| ||| || Sbjct 125 CTGGTGGAATCCCTTCTTTATCTTGGATCTTTTGTTTCAC 164 >seq2286 Length=9169 Score = 102 bits (112), Expect = 2e-16 Identities = 329/502 (66%), Gaps = 14/502 (3%) Strand=Plus/Plus Query 43906 ACTGCAAATGTAGATGCTCTTGGTGTTCTGCGTTTGTTAGACGCAGTTCGTATAGCAGGT 43965 ||| |||| ||||| || ||||| || || || ||| ||||| | ||||| ||| | Sbjct 3292 ACTTCAAACGTAGACGCAATTGGTACACTACGGTTATTAAACGCAATACGTATTGCAAAT 3351 Query 43966 GT----GAACTCTCGGA--TTTGCCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAG 44019 | || || | ||| ||||| || || ||| | | |||||| || || Sbjct 3352 ATTGCCGATAGCTGCAAATTTTATCAAGCATCCACGAGTGAGCTATTCGGAAAAGTGCAA 3411 Query 44020 GAGATTCCTCAAACAGAAAGGACTCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAG 44079 || | || |||| ||| | || ||||| || || | || || | ||| || || Sbjct 3412 GAAACGCCCCAAAAAGAGACCACACCGTTCTACCCAAGATCACCGTACGCTGTTGCTAAA 3471 Query 44080 CTATATGCCTATTGGAT--TTGTAAAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTA 44137 | |||||| |||||||| |||| || ||||| ||| | ||||| ||| | | | | Sbjct 3472 CAATATGCTTATTGGATAGTTGTCAAC--TATCGGGAGGCTTATGGAATGCACTTAAGCA 3529 Query 44138 ATTCGATT-TGTTTCAATCACGAAAGTCC-CAACAGAGGTCATCAGTTCGTGACTCGTAA 44195 || || ||||| || ||||||||||| | || | || | ||||| |||||||| Sbjct 3530 ATGGCATACTGTTT-AACCACGAAAGTCCTCGAC-GTGGACTGGCTTTCGTCACTCGTAA 3587 Query 44196 AATCACGAAAGCGGTTGCGAATATTTTCAACGGGACAGAAAAATGCATGTATCTAGGAAA 44255 ||| || | ||| || || || ||| ||| | ||||| || || ||||| Sbjct 3588 AATTACAAGAGCTGTGGCTAACATTAAATGCGGCAACCAAAAAACTTTGACACTGGGAAA 3647 Query 44256 CATAGACTCTAAAAGAGATTGGGGATATGCCTTGGATTATGTAGAAGCCATGTGGCTGAT 44315 | || | || | || |||||| |||| || |||||| | ||||||||| | || Sbjct 3648 TTTGGATGCAAAGCGGGACTGGGGACATGCAAAAGAATATGTATATGCCATGTGGTTAAT 3707 Query 44316 GTTGCAACAAGACAGGTCAGACGACTACGTTATTGCAACTGGAAAGACGACGAGTGTCCG 44375 | | |||||||| ||| ||||| ||| |||||||||| | |||| | ||| | Sbjct 3708 GCTTCAACAAGAATTACCAGGAGACTATGTTTGTGCAACTGGAGAAACGAATACTGTGAG 3767 Query 44376 TGACTTTGTAAAAATGGCGTTC 44397 | ||||| ||||| | ||| Sbjct 3768 ATATTTTGTCGAAATGTCATTC 3789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046616539829484