Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq8698 181 1e-40 seq1941 98.7 1e-15 seq2390 96.9 4e-15 >seq8698 Length=1787 Score = 181 bits (200), Expect = 1e-40 Identities = 611/939 (65%), Gaps = 23/939 (2%) Strand=Plus/Plus Query 23158 TTTTAAAAATCTTCATCTAAAGTGAATTTCACTGCTTTATCACTATTCAT-AACACCCAT 23216 ||||||||||| ||| |||| |||| ||| ||||| | || |||||| Sbjct 850 TTTTAAAAATCACAATCCAAAGAAAATTGTTGATCTTCTTCACT-TACACCAACACCAGC 908 Query 23217 TTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATT 23276 |||| |||||| || |||||| |||| ||||| || || ||||| | || || || | Sbjct 909 TTTTGAATATTCGCCTACACGTTTTTCAAAAAAGTTGGTTTTACCTTGCAAGGAGATCAT 968 Query 23277 TTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGA---TAATTCCTT 23333 |||||| |||| ||||| || || | ||| || | |||| || |||| | | Sbjct 969 TTCCATCCAATCGAATGGGTTGGATGCATTGTACAT---TTTAGATACACCTAATGCTTG 1025 Query 23334 TAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTAT 23393 ||| | | ||| || |||||||| ||||| |||||||| |||| || || || Sbjct 1026 TAACAAACGATCAGCGCAGAATTCAATGTATTGGCACATCAATGTTGAGTTCATGCCAAT 1085 Query 23394 TAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAAT 23453 | || ||||| | | | | | |||| |||||| || ||| |||| || Sbjct 1086 CAATTCAACTGGTAATGATTGGGAGACAAATACTTTTTCGATTTCAACCGCATTGCCGAT 1145 Query 23454 TATTTGAACAATAACTTCTTCACTAGGTGGAT-ATTT--TAAATACT---TAAACAATAA 23507 ||| | ||| ||| || ||| | |||| ||||| | | | ||||| Sbjct 1146 GATTGAATGAATCGTTTCCTCT---GGTAAACGATTTACTAAATGATCTTTGTATAATAA 1202 Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567 ||||| ||||||||||| | |||||||| | ||||||||| || ||||| ||| Sbjct 1203 GCATGCGAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAAAAACATAA 1262 Query 23568 TCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAA 23627 |||||||| | || |||||||| | |||||| | ||| || || || ||||| Sbjct 1263 ACCTGGCATCATACCACGTTTTTTTAACCAAAACACGGCACAGAAGGAACCACTGAAGAA 1322 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTAC--CAAATGTTGCATTATAATCA 23685 ||||| ||| || || || || || |||| | | | || | ||| || | | Sbjct 1323 GATACCTTCACACGCAGCGAATGCAAC--GACGCGCTCTGCGAACGATGCGTTGTCTGCG 1380 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745 |||| ||| | || || ||| || || ||||| ||||| || Sbjct 1381 TTGGTCCAACGCAAGCACCATTCTGCTTTTTCTTTGACGGCATCGATTGTATCAATAGCA 1440 Query 23746 TTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATAC 23805 || || | | ||||||||| | || || || || || |||| || |||| Sbjct 1441 TTCAACAAACGCGTTTTTTCTGGACCATTACGAATGTAAGTGTCTATTAACAAGGAATAC 1500 Query 23806 ATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGAC 23865 | ||| | |||||||||||| ||||| || ||||| ||||| ||||| | ||||||| | Sbjct 1501 ACTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAACGTGCTTCAGGC 1560 Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925 | ||| || || || |||| | | ||||||||||| |||||||| || ||| Sbjct 1561 ACTTGCACTTCGTTGGAAAAGTTCATCAACAAATTTTCGTTTACAATACCGTCGGATGCA 1620 Query 23926 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTT-TTCCA 23984 || || || || | || | | || || | | ||| | | | | | ||||| | ||| Sbjct 1621 GCGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTA-TCGCTCATTTTATCCCA 1679 Query 23985 ATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACG 24044 ||| || ||||| || || || | || || | ||||| ||| ||| || Sbjct 1680 ATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGATGCTTCAGCTTT 1739 Query 24045 CTTATACATTAGCCAAATATCATTATGTTGTATTGGAAA 24083 ||||||||| ||||||||||||||||||| ||||| || Sbjct 1740 TTTATACATTTGCCAAATATCATTATGTTGAATTGGGAA 1778 >seq1941 Length=10397 Score = 98.7 bits (108), Expect = 1e-15 Identities = 207/303 (68%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 64427 GATGTTATTGGAATTGATGAAGGGCAATTTTTTACTGATATAGTTGAATTTTCTGAAAAT 64486 ||||||||||| ||||| || || ||||| || ||||| || |||||| |||||| Sbjct 8756 GATGTTATTGGTATTGACGAGGGACAATTCTTCCCTGATTTATACGAATTTACTGAAAGA 8697 Query 64487 ATGGCCAATAAAGGAAAAATTGTAATTGTTTCAGCGTTAGATGCGACATAT-AAAAGAGA 64545 || ||| ||| | | ||| | || |||| | |||| | || | || || | Sbjct 8696 GCTGCAAATTTAGGCATGGTAGTAGTCATTGCAGCTCTTGATG-GTGATTTCGAACGAAA 8638 Query 64546 ACCATTTGGTAATATCCTAAATCTAGTTCCATTAGCTGAAAAAGTAATAAAATTAAATGC 64605 || |||||||| || ||||||||||||| ||||| | || | ||||||| ||| Sbjct 8637 GCCGTTTGGTAAAATATGTGATCTAGTTCCATTGGCTGAGAGTGTTACGAAATTAAGTGC 8578 Query 64606 TATATGTAAAATATGTTTCAAAGAT---GCTGCATTTACTAAAAGATTATGCAAAAG-TA 64661 | | |||| || ||| || || || | |||||| ||||| | |||| | || Sbjct 8577 TGTTTGTACAAGTTGTAAAAACAATAGCGCATCGTTTACTCAAAGAACA-ACAAACGATA 8519 Query 64662 CTGAAATCGAATTAATTGGTGGAGAGGACAAATATAGTTCCGTGTGTAGAAAGTGTTATT 64721 | | || ||| |||||||||| | || | ||| || | || |||||||| |||| || Sbjct 8518 CAGCAAAGGAAGTAATTGGTGGTGCTGAAATGTATCGTCCAGTCTGTAGAAAATGTTTTT 8459 Query 64722 TTA 64724 ||| Sbjct 8458 TTA 8456 >seq2390 Length=8212 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 21146 TTTTTCAAAAATTATTTGTGCTACTCTATCACC-CTTAGAAATATGAAATGTAGATTTTC 21204 |||||| ||||||| |||||| | ||| ||||| | | || | |||| | || | Sbjct 760 TTTTTCCAAAATTAATTGTGCAATTCTGTCACCTCGTTTAACTTGTAAATCTTC-TTCCC 702 Query 21205 CATTATTAATTAGAATAATTCCAACAATACCTCTATAATCCCTATCTATAACACCTCCAC 21264 ||| |||| || || || ||||||| | || | ||||||| ||| |||||||| | | Sbjct 701 CATGGTTAAATAAAACAACTCCAACATTTCCACGATAATCCGCATCAATAACACCAGCGC 642 Query 21265 CGATATCAATATTTTTATTTAAGGATAATCCTGATCTTGACGCTATTCTACCATA 21319 ||| |||||| | ||| || | | || |||||||||| ||| ||||||||||| Sbjct 641 CGACATCAATGTGTTTTTTCCATGCCAAACCTGATCTTGGCGCAATTCTACCATA 587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521428380884400