Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq810 165 2e-35 seq4707 132 1e-25 seq775 129 1e-24 seq6389 116 9e-21 >seq810 Length=26514 Score = 165 bits (182), Expect = 2e-35 Identities = 153/194 (79%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||| | || || ||||| |||||||| || || ||| || || Sbjct 7519 CAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACCCTTGATGTAGAACCATCTGAT 7578 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| |||||||||||||| |||||||||||||| || || || || ||| Sbjct 7579 ACTATTGAAAACGTAAAACAAAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAACAA 7638 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || ||||| | ||||||||| | || ||| || || ||| || Sbjct 7639 CGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACGTACACTTAGTGACTACAACATC 7698 Query 178104 CAAAAAGAATCAAC 178117 ||||||||| |||| Sbjct 7699 CAAAAAGAAGCAAC 7712 >seq4707 Length=625 Score = 132 bits (146), Expect = 1e-25 Identities = 112/138 (81%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 177996 GTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTC 178055 ||||| |||||||| || |||||||||||||| ||||| || || ||||| |||||||| Sbjct 251 GTCAAGCAAAAGATCCAAGACAAAGAAGGAATTCCTCCAGATCAACAACGTCTTATCTTT 310 Query 178056 GCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCA 178115 || || ||||| | ||||||||| | |||||| | |||||||| ||||||||||| || Sbjct 311 GCTGGTAAACAATTGGAAGATGGACGTACTCTTTCTGATTATAATATCCAAAAAGAAGCA 370 Query 178116 ACACTGCATCTTGTTTTG 178133 || || ||| | || ||| Sbjct 371 ACCCTTCATTTAGTATTG 388 >seq775 Length=28483 Score = 129 bits (142), Expect = 1e-24 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || || ||||| ||||| || || || ||| || || Sbjct 10467 CAAATTTTCGTAAAAACATTGACTGGTAAAACCATCACTCTTGATGTAGAACCATCTGAT 10526 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||||||||||| || |||||||||||||| || || || || ||| Sbjct 10527 ACTATTGAAAACGTTAAACAAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAACAA 10586 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGA 178079 || |||||||| || || ||||| | ||||||||| Sbjct 10587 CGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGA 10622 >seq6389 Length=961 Score = 116 bits (128), Expect = 9e-21 Identities = 149/204 (73%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAG---GTGGAAAGCTCAGACACCATC 177989 || |||||| | || |||||||| || || || || | || |||| || ||||| Sbjct 227 GTAAAAACTTTAACTGGAAAAACAATTACTCTAGATACAGAGGCAAGC---GATACCATT 171 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 | || ||||||||||| || || |||||||| || || || ||||| |||||| | Sbjct 170 TCGCGTGTGAAACAAAAGATCCAAGATAAAGAAGGGATTCCACCAGACCAACAACGATTG 111 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 || ||||| || ||||| | ||||||||| | || | || |||||||| | |||||| Sbjct 110 ATATTCGCAGGTAAACAATTAGAAGATGGACGTACATTAGCTGATTATAATATTCAAAAA 51 Query 178110 GAATCAACACTGCATCTTGTTTTG 178133 ||||| || ||||| | |||||| Sbjct 50 GAATCTACGTTGCATTTAGTTTTG 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203590143016324