Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3919 122 9e-23 >seq3919 Length=4506 Score = 122 bits (134), Expect = 9e-23 Identities = 292/440 (66%), Gaps = 4/440 (1%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || |||||||| || || || |||||||| | |||||| || ||||| || | Sbjct 1108 ACAGCAAGCACGCGAAATCACAGTGCAAGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGA 1049 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| ||||||||| || || ||||||||||| || | || |||||||| | Sbjct 1048 AGCACAAGCCGGGCATCAAACCCCGCTTCTTTAACCAGAACACGGCACAAAACGACCCGG 989 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 ||||||| || |||||| | || || || | | | |||||| ||| ||| | || Sbjct 988 AAAAGAAGATGCCCTCGCACGCGGCGAAAGCTACAACCCTTTCGGCAAACGACGCATTTT 929 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 | ||||| | ||| ||||| ||||| | || || | || | Sbjct 928 CGGCGTTGGTCCATCGAAGGCACCAATCGGCCTTTTGGCGGACCATGTCAATGTTATCGA 869 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 |||| || | || | || ||||| | | | | || ||||| || || || || Sbjct 868 TGGCATTCAGCAACCTATCCTTTTCTTTTCCATTTTTAATGTACGTGTCAATAAGAAGAG 809 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 ||| | ||| | ||| ||||| || ||||||||||| || ||||| ||||| | || | Sbjct 808 AGTATACTTCTGCGTGGATGTTTTCAATGGCTATCTGGAACCCGTAGAAGCACCTTGCCT 749 Query 17316 CCGCTATTTGAACTTCCACGTAGAATCGTTC--CGCTAGATTTTCGTTCACGATGCCGTC 17373 ||| | ||| ||||| |||| |||| | || || ||||| || |||||||| Sbjct 748 CCGGCAGTTGGACTTCGTTCGAGAA--GTTCATCAACAGGTTCTCGTTTACAATGCCGTC 691 Query 17374 GCTCGCGGCGAAAAACGCCA 17393 || |||||||| |||| Sbjct 690 AGAGGCTGCGAAAAAGGCCA 671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517499745459840