Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3919 136 4e-27 >seq3919 Length=4506 Score = 136 bits (150), Expect = 4e-27 Identities = 384/588 (65%), Gaps = 4/588 (1%) Strand=Plus/Minus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 |||||||| || || || | || ||||| | |||||| || |||||||| || || Sbjct 1100 CACGCGAAATCACAGTGCAAGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCACAAG 1041 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 || ||||| || || |||||||||||||| | ||| ||| ||||| |||||||| Sbjct 1040 CCGGGCATCAAACCCCGCTTCTTTAACCAGAACACGGCACAAAACGACCCGGAAAAGAAG 981 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381 || ||||| | || ||||| | | | ||| || ||| |||| || Sbjct 980 ATGCCCTCGCACGCGGCGAAAGCTACAACCCTTTCGGCAAACGACGCATTTTCGGCGTTG 921 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441 ||||| | ||| ||||| ||||| | || || | || ||||| || Sbjct 920 GTCCATCGAAGGCACCAATCGGCCTTTTGGCGGACCATGTCAATGTTATCGATGGCATTC 861 Query 16442 AACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATT 16501 | ||| | || ||||| | || | || ||||| ||||| || | | ||| | | Sbjct 860 AGCAACCTATCCTTTTCTTTTCCATTTTTAATGTACGTGTCAATAAGAAGAGAGTATACT 801 Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 |||| ||| ||||| || ||||||||||| || || |||||||| | ||||||| | | Sbjct 800 TCTGCGTGGATGTTTTCAATGGCTATCTGGAACCCGTAGAAGCACCTTGCCTCCGGCAGT 741 Query 16562 TGTACTTCCACGTAAAATCGTTC--CGCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619 || ||||| | || |||| | ||||||||| || || || |||||| || | Sbjct 740 TGGACTTCGTTCGAGAA--GTTCATCAACAGGTTCTCGTTTACAATGCCGTCAGAGGCTG 683 Query 16620 CAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAAT 16679 | ||||| |||| | || | ||||| | ||||| || | ||| ||| | Sbjct 682 CGAAAAAGGCCAGGACGTTGCTGATGAAGAACCGTTCGTTGTCCGTCATTTTATCCCAGT 623 Query 16680 CTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTT 16739 |||| |||| | | |||| ||||| | ||||| || || | || |||| Sbjct 622 CTTTACTGTCTTGTGCCAAGTCCAGCTCTTCCGCAGTCCAGAACGAGGCTTCAGCTTTTT 563 Query 16740 TATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGTATC 16787 | ||||||| ||||||||| |||| || || || || | ||| ||| Sbjct 562 TGTACATTTGCCAAATATCGTTGTGCTGGATCGGGAACAAAACGAATC 515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511369088684160