Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3919 118 1e-21 >seq3919 Length=4506 Score = 118 bits (130), Expect = 1e-21 Identities = 410/631 (65%), Gaps = 19/631 (3%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || |||||||| ||||| | |||||||| | || || | |||||||| | Sbjct 1108 ACAGCAAGCACGCGAAATCACAGTGCAAGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGA 1049 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | | |||||||| | || ||||| || | ||| || | || ||| || || | Sbjct 1048 AGCACAAGCCGGGCATCAAACCCCGCTTCTTTAACCAGAACACGGCACAAAACGACCCGG 989 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGT 24306 ||||||| || || || || || || || | || ||||| || | || ||| | Sbjct 988 AAAAGAAGATGCCCTCGCACGCGGCGAAAGCTACAACCCTTTCGGCAAA--CGACGCATT 931 Query 24307 -----CATGTATCCACTTTTGA--GC-CCAATCGGCCTTCTTTTTTACACAAGGCATTGT 24358 | | |||| | || || |||||||||||| | || || | || ||| Sbjct 930 TTCGGCGTTGGTCCA---TCGAAGGCACCAATCGGCCTTTTGGCGGAC-CATGTCAATGT 875 Query 24359 C-TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 24417 || || ||||| | | | ||||| || | || ||||| || || ||||| | Sbjct 874 TATCGATGGCATTCAGCAACCTATCCTTTTCTTTTCCATTTTTAATGTACGTGTCAATAA 815 Query 24418 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC 24477 |||| || | ||| | || |||||||||||||| || || || |||||||| || | Sbjct 814 GAAGAGAGTATACTTCTGCGTGGATGTTTTCAATGGCTATCTGGAACCCGTAGAAGCACC 755 Query 24478 TAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAA--TTTTCATTCACTAT 24535 | ||||| | | || ||||| | | || |||| | | | || || || || || Sbjct 754 TTGCCTCCGGCAGTTGGACTTCGTTCGAGAA--GTTCATCAACAGGTTCTCGTTTACAAT 697 Query 24536 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 24595 |||||| |||||| ||||| |||| || | | || || | ||||| || Sbjct 696 GCCGTCAGAGGCTGCGAAAAAGGCCAGGACGTTGCTGATGAAGAACCGTTCGTTGTCCGT 637 Query 24596 TAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 24655 | ||||| ||| || || | |||| | | |||| |||||| | ||||| || || Sbjct 636 CATTTTATCCCAGTCTTTACTGTCTTGTGCCAAGTCCAGCTCTTCCGCAGTCCAGAACGA 577 Query 24656 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || || || ||||| ||||| | ||| || || | | || || || || | ||| || Sbjct 576 GGCTTCAGCTTTTTTGTACATTTGCCAAATATCGTTGTGCTGGATCGGGAACAAAACGAA 517 Query 24716 TCTATTTGGATTTTTTGCAAGGATTGGTTCC 24746 || || || |||| | || ||||||||| Sbjct 516 TCGTTTCGGGTTTTCCGTCAGAATTGGTTCC 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593668996266240