Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq6558 123 2e-23 seq1992 120 3e-22 seq4042 95.1 1e-14 seq6148 86.0 5e-12 >seq6558 Length=25225 Score = 123 bits (136), Expect = 2e-23 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||| |||||| |||||||| ||||| | || ||| || ||||||||| |||||| ||| Sbjct 2723 GTGGCCTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCCAACTGTTTCCCC 2664 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| | | || ||||| ||| | ||||||||||| |||||||| || Sbjct 2663 GCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGAATCTTTTGCTTG 2604 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || |||||| |||| |||||| ||||| || || |||||| Sbjct 2603 ACGTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTCCCCGTCAACGTT 2544 Query 21159 TTGACAAATATTTGCAT--TTTGAA 21181 || |||||||| ||||| |||||| Sbjct 2543 TTCACAAATATCTGCATGGTTTGAA 2519 >seq1992 Length=1353 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 ||||||| || || | ||||||| ||||| |||| ||| || || || || || |||| Sbjct 853 TTCCCCCGCGAAGGCGAAGCACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCG 912 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| || || |||| |||| |||||| |||||| |||| | | ||| || || | Sbjct 913 ACAGCGTGCGGCCGTCTTCCAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAG 972 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||||||| |||||||| ||||| | | | || || |||||| Sbjct 973 GGATGCCTTCCTTGTCTTGAATCTTTTGCTTCACATTCTCAATCGTGTCCGAGGGCTCGA 1032 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| ||||| | || ||||| || |||||||| Sbjct 1033 CATCCAAGGTTATGGTCTTCCCGGTAAGGGTCTTGACGAAAATTTGCAT 1081 >seq4042 Length=4160 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | || || | || ||| |||| ||| || || ||||| ||||| Sbjct 2625 TTCCACCACGGAGTCGAAGGACAAGATTCAACGTGGCCTCTTTCTGGATGTTGTAGTCGC 2566 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| |||| | |||| |||||||| || || ||| | ||||| | ||| || ||| || Sbjct 2565 CCAAGGTTCGACCGTCTTCCAGCTGCTTCCCGGCAAAGATAAGACGCTGTTGATCCGGGG 2506 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||||||| |||| |||| ||||| | ||| || || | || || Sbjct 2505 GAATGCCTTCCTTGTCCTGGATCATTTGCTTCACGTTCTCGATCGTGTCGCTCGGTTCGA 2446 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTG 21172 || | |||||| |||| ||| ||| || | ||||| ||||| Sbjct 2445 CGTCAAGGGTAATCCTCTTCCCG--TAA-GTCTCTACAAACATTTG 2403 >seq6148 Length=2258 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | || |||| || | |||| |||||||| ||||| ||||| Sbjct 1117 TCCACCACGAAGACGAAGAACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACT 1176 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || ||| || | || |||| ||||| || || | ||||| | || || || ||| Sbjct 1177 CAAGGTGCGGCCATCTTCCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGG 1236 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||||||||| ||||||||| || || | ||| || |||| || ||| Sbjct 1237 GATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCAC 1296 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||||||||| || || || | || || || || |||||||| ||| Sbjct 1297 ATCGAGGGTAATGGTTTTACCCGTAAGAGTCTTTACGAAAATTTGCATCTTG 1348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422222723139008