Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3919 210 2e-49 seq6558 143 3e-29 seq6148 141 1e-28 seq229 114 1e-20 seq2749 105 7e-18 seq4042 104 2e-17 >seq3919 Length=4506 Score = 210 bits (232), Expect = 2e-49 Identities = 411/602 (68%), Gaps = 4/602 (1%) Strand=Plus/Plus Query 116603 CGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAG 116662 || ||||| | ||||| || || || || || |||| ||||||||||| || || Sbjct 514 CGATTCGTTTTGTTCCCGATCCAGCACAACGATATTTGGCAAATGTACAAAAAAGCTGAA 573 Query 116663 GCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGC 116722 || ||||||||||| | || ||| ||||| || | | |||| | |||||||| Sbjct 574 GCCTCGTTCTGGACTGCGGAAGAGCTGGACTTGGCACAAGACAGTAAAGACTGGGATAAA 633 Query 116723 TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGAC 116782 ||| |||||||| || ||||||| |||| |||||||||||||| ||| ||| Sbjct 634 ATGACGGACAACGAACGGTTCTTCATCAGCAACGTCCTGGCCTTTTTCGCAGCCTCTGAC 693 Query 116783 GGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCG 116842 ||||| || |||||||| ||| | | ||| | | || || || || | ||||| Sbjct 694 GGCATTGTAAACGAGAACCTGTTGATGAACTTCTCGAACGAAGTCCAACTGCCGGAGGCA 753 Query 116843 CGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC 116902 ||||||||||||| || ||||| ||||| || ||| | ||| | ||| | || || Sbjct 754 AGGTGCTTCTACGGGTTCCAGATAGCCATTGAAAACATCCACGCAGAAGTATACTCTCTT 813 Query 116903 CTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGA- 116961 || || ||||||||| | | | || ||| | ||| |||| |||||||| Sbjct 814 CTTATTGACACGTACATTAAAAATGGAAAAGAAAAGGATAGGTTGCTGAATGCCATCGAT 873 Query 116962 GACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGA 117021 || || | || ||| | |||||||| ||| || || |||| | || | | | Sbjct 874 AACATTGACATG-GTCCGCCAAAAGGCCGATTGGTGCCTTCGATGGACCAACGCCGAAAA 932 Query 117022 GGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTT-CGG 117080 || | || | ||| | | || || ||||| || ||||||| ||||||||| ||| Sbjct 933 TGCGTCGTTTGCCGAAAGGGTTGTAGCTTTCGCCGCGTGCGAGGGCATCTTCTTTTCCGG 992 Query 117081 GCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCA 117140 | |||| | ||| | || ||| | ||||| || || | ||||||||| || ||| Sbjct 993 GTCGTTTTG-TGCCGTGTTCTGGTTAAAGAAGCGGGGTTTGATGCCCGGCTTGTGCTTCT 1051 Query 117141 GCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 ||||||||||||| | | |||||||| |||| || || || || || ||||||| || Sbjct 1052 CCAACGAGCTCATCAGCCGCGACGAGGGCTTGCACTGTGATTTCGCGTGCTTGCTGTACA 1111 Query 117201 AG 117202 || Sbjct 1112 AG 1113 >seq6558 Length=25225 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || |||||| | ||||| || || || ||| | |||||||| || | Sbjct 2527 ATGCAGATATTTGTGAAAACGTTGACGGGGAAGACGATTACCTTGGACGTCGAGCCCTCG 2586 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| |||| |||| ||||| || || |||||| | ||||| Sbjct 2587 GACACCATTGAGAACG-TCAAGCAAAAGATTCAGGACAAGGAAGGGATCCCCCCCGACCA 2645 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | || | ||||| |||||| |||| |||| || || ||| ||||||||| Sbjct 2646 ACAACGGTTGATTTTTGCGGGGAAACAGTTGGAGGACGGCCGAACGCTCTCCGACTACAA 2705 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| |||||||||||||| || || || || | ||| | |||| || Sbjct 2706 CATTCAGAAGGAGGCCACCCTCCACCTCGTCCTTCGCCTCCGGGGGGG 2753 >seq6148 Length=2258 Score = 141 bits (156), Expect = 1e-28 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| |||||||| || || ||||| |||||||| ||| |||| || ||| | Sbjct 1347 AAGATGCAAATTTTCGTAAAGACTCTTACGGGTAAAACCATTACCCTCGATGTGGAACCA 1288 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | ||||| ||||| |||| || | ||||| || || |||||| | || Sbjct 1287 AGTGACACCATCGAAAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCCCCTGA 1229 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| || |||| ||| || ||||| |||| || | |||||| | | ||||| Sbjct 1228 TCAACAACGTCTTATCTTCGCCGGAAAACAATTGGAAGATGGCCGCACCTTGAGTGACTA 1169 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| ||||| ||||| || || Sbjct 1168 CAACATCCAAAAGGAAGCCACCCTTCA 1142 >seq229 Length=1895 Score = 114 bits (126), Expect = 1e-20 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 || ||||| |||||||| || || || || || || || || | ||||| || | | | Sbjct 682 ATACAAATTTTCGTAAAGACCCTGACCGGTAAGACGATTACTTTGGACGTGGAGCCGAGC 741 Query 40750 GACAG---CGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||| |||| |||| ||||| ||| |||| |||||||| || | || ||| Sbjct 742 GACACGATCGTG--AACG-TCAAGCGAAAGATTCAGGACAAAGAAGGTACCCAACACGAC 798 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 | || || || |||| ||| || || |||||||| |||| ||| | ||| | ||||||| Sbjct 799 AAACAGCGGCTGATCTTCGCCGGTAAGCAGCTGGAAGACGGGCGAAACCTGAGCGACTAC 858 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 ||| | ||||| || |||||||||||||| | | ||| | |||| ||||| Sbjct 859 AACGTTCAGAAAGAAGCCACGCTGCATCTGCTACTCCGCCTTCGGGGAGGCGG 911 >seq2749 Length=6745 Score = 105 bits (116), Expect = 7e-18 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756 ||||||| || || | || || || || || || | |||| || | | ||||| || Sbjct 5048 TATTCGTCAAGACATTGACCGGTAAGACGATTACTTTGTACGTGGAGCCTAGCGACA-CG 5106 Query 40757 TGCA--AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 || |||| |||||| |||||| | |||||||| || ||||| | ||||| || || Sbjct 5107 ATCATGAACG-TCAAGGGAAAAATCCAGGACAAAGAAGGTATCCCGCCTGACCAACAGCG 5165 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 ||| || | ||| ||||| |||||||| || | || || | ||| ||||||||||| Sbjct 5166 ACTGATTTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCCGATTACAACATCCA 5225 Query 40875 GAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||| |||| |||| ||||| |||||| Sbjct 5226 AAAGGATTCCACCTTGCACCTAGTCTTGCGC 5256 >seq4042 Length=4160 Score = 104 bits (114), Expect = 2e-17 Identities = 150/207 (72%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752 ||||| || ||| | || | ||||| || | || ||| | ||||||||| | | |||| Sbjct 2403 CAAATGTTTGTAGAGAC--TTACGGG-AAGAGGATTACCCTTGACGTCGAACCGAGCGAC 2459 Query 40753 AGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 | | | |||| | ||| ||| || | ||||| || ||||| ||| |||| || || Sbjct 2460 ACGATCGAGAACG-TGAAGCAAATGATCCAGGACAAGGAAGGCATTCCCCCGGATCAACA 2518 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 || || |||| || || || |||||||| |||| || ||| | |||||||||||| Sbjct 2519 GCGTCTTATCTTTGCCGGGAAGCAGCTGGAAGACGGTCGAACCTTGGGCGACTACAACAT 2578 Query 40872 CCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| ||||||||| || |||| || Sbjct 2579 CCAGAAAGAGGCCACGTTGAATCTTGT 2605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515173551578880