Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6148 98.7 1e-15 seq1992 91.5 2e-13 seq229 84.2 3e-11 seq4042 82.4 9e-11 seq1888 82.4 9e-11 >seq6148 Length=2258 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||||| || ||||| ||| || || || | || || Sbjct 1136 ACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCATCTTCC 1195 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | || || || ||||| || || || || || || | || | | ||||||||| | Sbjct 1196 AATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGGATACCTTCCTTGTCCTGG 1255 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || ||||| |||| | | | ||||| || | ||||||||||| || |||||||| Sbjct 1256 ATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACATCGAGGGTAATGGTTTTA 1315 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||| || |||||||| || |||||||| || Sbjct 1316 CCCGTAAGAGTCTTTACGAAAATTTGCATCTT 1347 >seq1992 Length=1353 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| ||||| ||| ||| || || ||||||||||| | ||| || || |||| || Sbjct 872 CACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCGACAGCGTGCGGCCGTCTTC 931 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | ||| || || || || || | ||||| || |||| || | || |||||||| Sbjct 932 CAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCTTG 991 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || ||||| || | || | | |||||| | || ||||| | || ||||| || Sbjct 992 AATCTTTTGCTTCACATTCTCAATCGTGTCCGAGGGCTCGACATCCAAGGTTATGGTCTT 1051 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| || || |||||||| Sbjct 1052 CCCGGTAAGGGTCTTGACGAAAATTTGCAT 1081 >seq229 Length=1895 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 42977 CAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAG 43036 || ||||| ||| || || |||| ||||| || ||| | ||| |||| || || Sbjct 888 CAGATGCAGCGTGGCTTCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAG 829 Query 43037 CTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG-GCCGGCACGCTCTCCTTGTCCATGA 43095 ||||||||| ||||| || || ||||| | |||| | || || || |||||| | Sbjct 828 CTGCTTACCGGCGAAGATCAGCCGCTGTTTGTCGTGTTGGGTACCT-TCTTTGTCCTGAA 770 Query 43096 TTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGC 43155 | ||| | |||| || | | ||||||||||| ||||| || | || || || || | Sbjct 769 TCTTTCGCTTGACGTTCACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTCTTAC 710 Query 43156 CCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || |||||||| || ||||| || Sbjct 709 CGGTCAGGGTCTTTACGAAAATTTGTAT 682 >seq4042 Length=4160 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 || ||| ||| ||| || || || ||||| || ||| || || |||| || ||||| Sbjct 2600 ATTCAACGTGGCCTCTTTCTGGATGTTGTAGTCGCCCAAGGTTCGACCGTCTTCCAGCTG 2541 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||| || || || || || ||||| || || | || | || ||||||||| ||| | Sbjct 2540 CTTCCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCTTCCTTGTCCTGGATCAT 2481 Query 43100 TTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 ||| || | || | | ||||||||||| ||| || || | || || | || ||||| Sbjct 2480 TTGCTTCACGTTCTCGATCGTGTCGCTCGGTTCGACGTCAAGGGTAATCCTCTT-CCCGT 2422 Query 43160 TAGCGTCTTTACAAAGATTTG 43180 | |||| |||||| ||||| Sbjct 2421 AA--GTCTCTACAAACATTTG 2403 >seq1888 Length=501 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 43049 GAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAG 43108 ||| || || ||||| || || | || | | ||||||||| ||| ||||| |||| Sbjct 1 GAAGATAAGACGCTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGAC 60 Query 43109 CGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 || | | || || || | |||||||||| |||||||||||| ||||| | ||| || Sbjct 61 GTTCTCGATGGTATCACTTGGCTCCACATCGAGCGTGATGGTTTTACCCGTCAACGTTTT 120 Query 43169 TACAAAGATTTGCATTTT 43186 ||| || |||||||| || Sbjct 121 TACGAAAATTTGCATATT 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571766936960640