Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3675 161 2e-34 seq4420 122 2e-22 >seq3675 Length=4586 Score = 161 bits (178), Expect = 2e-34 Identities = 419/632 (66%), Gaps = 9/632 (1%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || | |||||| | ||| | |||||||| |||||| | || || | || || Sbjct 628 GACTTCGGGTACGACTACTTCGGGTTCAAAACCTTGGAGAGGGCCTACCTTTTGAAGATC 687 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | ||| ||||||| || || ||||||||| | ||||| || | |||| || ||| Sbjct 688 AACGGCCAGATCGTCGAGCGCCCGCAGCACATGCTCATGCGCGTTTCCATCGGTATCCAC 747 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGA--TGA 248986 || | ||||| ||| | | | ||||||| |||| | ||||| ||| || | | | Sbjct 748 AAAGCGGACATCGAGCGAGCGATCGAGACCTACAACTTGATGAGC-AACA-TGTACTTCA 805 Query 248987 CACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCT 249046 | || ||||| ||||| |||||||||||||| ||| | ||||| |||||||| Sbjct 806 CTCACGCCACGCCGACCCTCTTCAACGCCGGGACCCCACGCCCGCAGCTCGCCTCGTGCT 865 Query 249047 TTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG- 249105 | | || ||||| | |||||| |||| || || || ||||| ||| || | Sbjct 866 TCTTGCTGACCATGAAGGACGACAGCATCGAAGGGATCTACGACAC-CTTGAAGTCCTGC 924 Query 249106 GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAG 249165 || || || | ||| || || |||||||| ||| || | ||| || | | Sbjct 925 GCCTGCATCAGCAAGTACGCCGGGGGCATCGGTCTATCCATCCACGGCATTCGCTCCCAA 984 Query 249166 GGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGC 249225 || ||||| || || || || ||| | || ||| | ||| | || || | Sbjct 985 GGCAGCTACATTCGGGGCACCAACGGTTCCAGCAACGGCATCATCCCCATGCTGCGCGTC 1044 Query 249226 TTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCC 249282 || | |||||| ||| | || |||| | ||| || || ||||| ||||||||| Sbjct 1045 TTCAACGACACCGCACGGTACGTCGACCAAGGCGGAGGCAAGCGCAAGGGCTCGTTCGCC 1104 Query 249283 ATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAAC 249342 ||||| | || ||||||||| || | || |||||| |||| ||||| || ||| || Sbjct 1105 ATGTACCTTGAGCCGTGGCACGCGGACGTTTTTGAGTTCTTGGATTTGAAGAAAAACCAC 1164 Query 249343 GGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTC 249402 || ||||| | | || || ||||| ||||||| ||||| || | ||| | ||| Sbjct 1165 GGTGACGAGAACGCCCGCGCCCGCGACCTGTTCTACGCGATGTGGATCCCAGACCTTTTC 1224 Query 249403 ATGCGCCGCGTCAAGGCCGACGGCGATTGGAC 249434 ||| ||||| || ||||||| | ||||| Sbjct 1225 ATGAAGCGCGTACAGTCCGACGGGCAGTGGAC 1256 >seq4420 Length=3733 Score = 122 bits (134), Expect = 2e-22 Identities = 270/398 (68%), Gaps = 29/398 (7%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 |||||||| ||||| || | || || || || || || || || || || ||||||||| Sbjct 2780 CTTCCTCACTTGCTATTTTATGGGCCCCCGGGCACGGGTAAAACCTCTACGATCCTGGCG 2839 Query 254061 --CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGA-GCGCGTGCTCGAGCTGAAC 254117 ||| | |||| ||| || | | | |||| ||| |||||| | ||||||||| Sbjct 2840 TGCTGCCGGGAAC--TGTATGGGTACGAGCTTATGA-AGACGCGCGTCTTGGAGCTGAAC 2896 Query 254118 GCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATG 254177 || || ||||| |||||| | ||||||| ||| ||| ||||| | ||| | ||| Sbjct 2897 GCCTCGGACGACCGCGGGATCAACGTCGTTCGCACCAAAATCAAATCGTTCGCGCAGAAC 2956 Query 254178 TCGATTTCGTCGT----------TCCAACC--CGGC--TGTCCGCCTTTCAAGCTCGTGA 254223 || ||||| | |||| || | || || || ||||| | | | Sbjct 2957 TC-----CGTCGGAAGAGATACATTCAACGGACGCCCATGCCCCCCGTTCAAAATAATCA 3011 Query 254224 TCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGG 254283 |||| |||||||| || || ||||| | | ||| ||| | ||||| ||||| || || | Sbjct 3012 TCCTTGACGAGGCAGATACGATGACAGAAGCCGCCCAGGCTGCCCTGCGCCGCACCATCG 3071 Query 254284 AGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCAT 254341 || |||| ||||| || || |||||| | ||||||||||| | || |||||| Sbjct 3072 AGGACTACTCGAAGGTGACCCGGTTCTGCCTGATATGCAACTACGTTAGCCG--GATCAT 3129 Query 254342 CGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 || || | | || |||||||| |||||||| |||| Sbjct 3130 CGAGCCCATCTCCTCGCGGTGCGCAAAGTTTCGTTTCA 3167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073668885904384