Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6558 140 3e-28 seq229 125 6e-24 seq1992 122 7e-23 seq6148 118 8e-22 seq2749 82.4 6e-11 >seq6558 Length=25225 Score = 140 bits (154), Expect = 3e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||||||||||||| || || |||| |||| || Sbjct 2730 GTGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCCAACTG 2671 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| || || || |||||||| ||||||||||| || | || ||||||||| ||| || Sbjct 2670 TTTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGAATCTT 2611 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 |||||| || | | | | ||||| ||| || |||| |||||||||||| ||||| Sbjct 2610 TTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTCCCCGT 2551 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || || |||||||| || |||||| Sbjct 2550 CAACGTTTTCACAAATATCTGCATG 2526 >seq229 Length=1895 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||||||| || ||||||| |||||||||| |||| | || |||| ||||| || Sbjct 884 TGCAGCGTGGCTTCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAGCTGC 825 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| |||| |||||||| |||| | | ||| || |||||| ||| ||| Sbjct 824 TTACCGGCGAAGATCAGCCGCTGTTTGTCGTGTTGGGTACCTTCTTTGTCCTGAATCTTT 765 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 |||| || | | | |||| | |||||| |||| ||||||||||| || ||| Sbjct 764 CGCTTGACGTTCACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTCTTACCGGTC 705 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 || ||||| || || ||||| ||| Sbjct 704 AGGGTCTTTACGAAAATTTGTATG 681 >seq1992 Length=1353 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| |||| ||| ||||| || ||||| || ||| ||| |||| ||| Sbjct 873 ACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCGACAGCGTGCGGCCGTCTTCC 932 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || || || |||||||||||||| |||||||| | || |||||||| | Sbjct 933 AACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCTTGA 992 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || |||||||| || | | | ||||| ||| || |||| ||| || ||||| Sbjct 993 ATCTTTTGCTTCACATTCTCAATCGTGTCCGAGGGCTCGACATCCAAGGTTATGGTCTTC 1052 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| || || ||||||||| Sbjct 1053 CCGGTAAGGGTCTTGACGAAAATTTGCATG 1082 >seq6148 Length=2258 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||| || ||||||||||| ||| ||| | || ||| Sbjct 1136 ACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCATCTTCC 1195 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||||||||||||| || | || ||||| || || || | ||| ||||||||| Sbjct 1196 AATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGGATACCTTCCTTGTCCTGG 1255 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || |||||||| || | | | |||| | ||||| || | |||||| || || Sbjct 1256 ATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACATCGAGGGTAATGGTTTTA 1315 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||| |||||||| || || |||||||| ||| Sbjct 1316 CCCGTAAGAGTCTTTACGAAAATTTGCATCTTG 1348 >seq2749 Length=6745 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || || | ||||| ||| ||||| || |||||||| ||| || || | || Sbjct 5252 AAGACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGACAAAGTACGGCCATCT 5193 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| || || |||||||| |||| ||||||||||| || || | ||| || |||||| Sbjct 5192 TCCAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGGGATACCTTCTTTGTCC 5133 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| ||| || | | |||| | | |||||| | || ||||||||| Sbjct 5132 TGGATTTTTCCCTTGACGTTCATGATCGTGTCGCTAGGCTCCACGTACAAAGTAATCGTC 5073 Query 45305 TTGCCCGTCAGAGTCTTCACAAA 45327 || || |||| ||||| || || Sbjct 5072 TTACCGGTCAATGTCTTGACGAA 5050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395041071428848