Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq3919 102 8e-17 >seq3919 Length=4506 Score = 102 bits (112), Expect = 8e-17 Identities = 410/634 (65%), Gaps = 19/634 (3%) Strand=Plus/Minus Query 13934 TTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 || ||||| || || || || |||| ||| ||||| ||||||| ||||||| ||||| Sbjct 1373 TTCTCAAAAAAATTGGTCTTTCCTTGCAGCGATATCATTTCCATCCAATCAAACGGATTG 1314 Query 13994 GTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCA 14053 |||| | ||| || ||| || | | | | |||| || || | |||| Sbjct 1313 GTTGCGTTGTACATCTTTTCAACCCCCAAGGCCACCAACAATCGGTCTGCGCAGTACTCG 1254 Query 14054 ATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTT 14113 || |||| |||| || ||||||| ||||| | || || || | | |||| Sbjct 1253 ATGTATTCGCACATCAAGGTGGAATTCATCCCTATCAATTCCACGGGCAATGCTTTGGAC 1194 Query 14114 AAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGT-AATAATTTCATTAGA 14172 | || ||||||| || |||||| | || ||| |||| ||| || | || Sbjct 1193 ACGAAAACTTTTTCGATGTCCACAGCGTTCCCGATGATA-TCGTGAATGCGTTGTTGAG- 1136 Query 14173 AGGAGGATATTTTAGATGT-----TTAAAAATTAAACACGCAAAATCACAATGAAGGCCC 14227 |||| ||||| | || || | | || ||||| |||||||| || | |||| Sbjct 1135 -GGAGTTTATTTATCAAGTGGTCCTTGTACAGCAAGCACGCGAAATCACAGTGCAAGCCC 1077 Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 || || | || || || ||||| || || || || |||||||| || || || ||| Sbjct 1076 TCGTCGCGGCTGATGAGCTCGTTGGAGAAGCACAAGCCGGGCATCAAACCCCGCTTCTTT 1017 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 14347 ||||| || | ||| || || ||||||||||| || ||||| || || || ||| Sbjct 1016 AACCAGAACACGGCACAAAACGACCCGGAAAAGAAGATGCCCTCGCACGCGGCGAAAGCT 957 Query 14348 ATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-ATCCATTTTCTA--GC-CCATTC 14403 | | | ||| ||||||| || |||| | || | |||| || | || ||| || Sbjct 956 ACAACCCTTTCGGCAAACGACGCATTTTCG-GCGTTGGTCCA---TCGAAGGCACCAATC 901 Query 14404 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTT 14463 | |||| | | || || | || || ||||| | || ||||| ||||| Sbjct 900 GGCCTTTTGGCGGACCATGTCAATGTTATCGATGGCATTCAGCAACCTATCCTTTTCTTT 841 Query 14464 AGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCCA 14522 | || |||||| || |||||||| ||| | || | ||| | ||| |||||||| | Sbjct 840 TCCATTTTTAATGTACGTGTCAATAAG-AAGAGAGTATACTTCTGCGTGGATGTTTTCAA 782 Query 14523 TAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14556 | |||||||| || || || || || || || || Sbjct 781 TGGCTATCTGGAACCCGTAGAAGCACCTTGCCTC 748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482302864179840