Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3675 251 6e-62 seq3919 154 1e-32 seq6148 129 5e-25 seq229 100 3e-16 seq1992 91.5 1e-13 seq4042 89.7 5e-13 seq6558 86.0 6e-12 >seq3675 Length=4586 Score = 251 bits (278), Expect = 6e-62 Identities = 962/1501 (64%), Gaps = 38/1501 (3%) Strand=Plus/Minus Query 22465 AAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 |||||| || | |||| || || | | ||| ||||||| ||| | |||||||| ||| Sbjct 2121 AAACTCTCCTG-CAAGCACACGTCTGTTGTACATGTTGGTCGTGTATGGTTCGAAGCATT 2063 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 | |||||||||| || || | |||||| || |||||||| ||||| | || | ||||| Sbjct 2062 CGTTGTTTCCCATAATTTGTGAGGTCGAGGCCGTCGGCATTGGCGCGACGAGCAACGAGT 2003 Query 22584 TTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACG 22643 | | | ||||||||| | | || || || ||||||||| | || | | Sbjct 2002 TGCGTACGCCGTGCTTGGCGACATTGGCGCGAAGTTCCGCCCAGTCCCATCGGTCCGTTG 1943 Query 22644 GCGTCACATTGTCCCACATATCGTATTGCAACACGCC----GCGACTCGCCGGGCTGCCT 22699 | || || || |||||| || ||| || | ||| | |||| || | |||| Sbjct 1942 GGGTAACGTT---CCACATGTCCGGTTGGAAGATGCCTTTGGAGACT----GGACAGCCT 1890 Query 22700 TCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCG 22759 ||| || ||||| | || | |||| ||||| ||| || |||| || Sbjct 1889 GGGTAGGTCTCGTAGTGTCCGAAGCGTTCGGCCTCCTCGCAAGACGCGGTCATCGCGGCG 1830 Query 22760 TAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGC 22819 | || || || ||||| || | ||||||||||| ||| | |||||||| | || Sbjct 1829 AAGTACATGGTTTCGAATATCTCCTTGTTCAATTGTCGGGCCTCTTCGCTTTCGAATGGA 1770 Query 22820 ATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTT 22879 | ||||||| | ||||||||| || | || || ||||| | || || || |||| Sbjct 1769 AAGCGCATCAAAATGAACGCGTCGGCAAGCCCTTGGACGCCCAGCCCAATTGGGCGGTGG 1710 Query 22880 TTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTC 22939 || ||| || ||||| || || || | || ||||| | |||| Sbjct 1709 CGCATATTGGAGTAGCGAGCCTCCTCCACTGGGTAGTAGTTGACGTCGATGACACGGTTC 1650 Query 22940 AAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC--GC--- 22994 ||||| |||||| |||| | | || ||| || || Sbjct 1649 AAGTTGACGGTCACGGTTTTAACAACATCGAACAGTGCCTTGTGGTTGTACACTGGCTTG 1590 Query 22995 ---CCGATTGTA-CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACC 23050 ||| | || | || ||||| | | ||| || || | ||||| ||||| | | Sbjct 1589 TCGCCGCTGGTGTCCACGAACTTTGGCAAGCAGATGGACGCCAAGTTGCAAACGGCAATC 1530 Query 23051 TCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCC 23110 ||||| || ||||||| | || || || || | || || | || || || ||| Sbjct 1529 TCGTCCGGGGCAGTGTACTGGATGATCTCCGTGCACAAGTTACTCGATTTAATAGTTCCC 1470 Query 23111 AAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCC 23170 || || |||||||||||| || ||||| || |||||||||||||||||||| || || Sbjct 1469 AAGTTTTGCTGGTTGCTTTTGCGGTTGCAAGAGTCCTTGTAGAGCATGTACGGTGTTCCG 1410 Query 23171 GTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACG 23230 || || || || || | ||| ||||| ||| ||| | | ||| | Sbjct 1409 GTTTCTACTTGACTTTCAAGGATTTTGAACCACAATTCCTGGGCGCGGATG-GTCTT--G 1353 Query 23231 TACC---TGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAG 23287 ||| |||| ||| |||||||||| |||||| | || || || | || | Sbjct 1352 AACCCTTTGCCCTCTGCCTCGTACTTGGCGTACAAGGTTTCGAACTCCTCGCCCCAGGTT 1293 Query 23288 TCGGCCAGGC--CGGGCGA--TTGCATCGGACACATGAGACTCCACATTGAGTCATTTTC 23343 ||| |||| ||||| | ||| ||||| | | ||||| ||| | Sbjct 1292 TCGTGCAGGTTACGGGCCACGTTG----GGACAGAACAAGGTCCACTGCCCGTCGGACTG 1237 Query 23344 AACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCAC 23403 ||||| |||| ||||| || || ||||| | ||||||||||| ||||||||||| | Sbjct 1236 TACGCGCTTCATGAAAAGGTCTGGGATCCACATCGCGTAGAACAGGTCGCGGGCGCGGGC 1177 Query 23404 CTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGG 23463 | ||| | ||| ||| || ||||||||||| || || || |||||||| |||||||| Sbjct 1176 GTTCTCGTCACCGTGGTTTTTCTTCAAATCCAAGAACTCAAAAACGTCCGCGTGCCACGG 1117 Query 23464 CTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGC 23523 ||| ||||| | ||| |||| |||| | ||| ||||| || |||||||| || || Sbjct 1116 CTCAAGGTACATGGCGAACGAGCCCTTGCGCTTGCCTCCGCCTTGGTCGACGTACCGTGC 1057 Query 23524 CGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGC 23583 |||| |||| | || | ||||| || | || |||||| | ||| |||| | Sbjct 1056 GGTGTCGTTGAAGACGCGCAGCATGGGGATGATGCCGTTGCTGGAACCGTTGGTGCCC-C 998 Query 23584 CACACTCG-AACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATT 23642 | | | |||| | |||| | ||| | | | ||| ||||| ||| | | | Sbjct 997 GAATGTAGCTGCCTTGGGAGCGAATGCCGTGGATGGATAGACCGATGCCCCCGGCGTACT 938 Query 23643 TCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGG 23702 | || ||||| |||| ||||||||||| || ||||||||||| || || Sbjct 937 TGCTGATGCAGGCGCAGGACTTCAAGGTGTCGTAGATCCCTTCGATGCTGTCGTCCTTCA 878 Query 23703 TCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCG 23762 | | | |||||| ||||| | | |||| || || |||| ||| || |||| Sbjct 877 TGGTCAGCAAGAAGCACGAGGCGAGCTGCGGGCGTGGGGTCCCGGCGTTGAAGAGGGTCG 818 Query 23763 GGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAA 23822 | ||||||| || ||||| || ||| | ||||| || ||||| || || | Sbjct 817 GCGTGGCGTGAGTGAAGTACATGTTGCTCATCAAGTTGTAGGTCTCGATCGCTCGCTCGA 758 Query 23823 TGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCG 23882 ||||| || ||| |||||||||| |||||||| | ||||| || || | |||||| Sbjct 757 TGTCCGCTTTGTGGATACCGATGGAAACGCGCATGAGCATGTGCTGCGGGCGCTCGACGA 698 Query 23883 TGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCAT 23942 | |||||| || || || || || | | | || ||||| || || || ||||| | Sbjct 697 TCTGGCCGTTGATCTTCAAAAGGTAGGCCCTCTCCAAGGTTTTGAACCCGAAGTAGTCGT 638 Query 23943 A 23943 | Sbjct 637 A 637 >seq3919 Length=4506 Score = 154 bits (170), Expect = 1e-32 Identities = 381/571 (67%), Gaps = 8/571 (1%) Strand=Plus/Plus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || |||||| | ||||||||||| || ||||| ||||| ||||| | ||||| | ||| Sbjct 544 GATATTTGGCAAATGTACAAAAAAGCTGAAGCCTCGTTCTGGACTGCGGAAGAGCTGGAC 603 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || | | || | || |||||| | | || || | || || | Sbjct 604 TTGGCACAAGACAGTAAAGACTGGGATAAAATGACGGACAACGAACGGTTCTTCATCAGC 663 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||| |||| |||||||| || || || || ||||| |||||||| || | | Sbjct 664 AACGTCCTGGCCTTTTTCGCAGCCTCTGACGGCATTGTAAACGAGAACCTGTTGATGAAC 723 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || | ||||| ||| || ||||||| || ||||| ||||| || || | |||||| Sbjct 724 TTCTCGAACGAAGTCCAACTGCCGGAGGCAAGGTGCTTCTACGGGTTCCAGATAGCCATT 783 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 |||||| | || ||||| | || || || || || || |||||| | || | | || Sbjct 784 GAAAACATCCACGCAGAAGTATACTCTCTTCTTATTGACACGTACATTAA--AAATGGAA 841 Query 57867 GAGAAACG--TAGACTGTTCAACGCGATCGA-AACAATGCCCGCGATCGCCAAGAAGGCA 57923 ||||| | ||| || | || || ||||| |||| || | | |||||| ||||| Sbjct 842 AAGAAAAGGATAGGTTGCTGAATGCCATCGATAACATTGACATGGTCCGCCAA-AAGGCC 900 Query 57924 GAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCG 57983 || |||| | ||||| || || | || |||| ||||| ||| | | || Sbjct 901 GATTGGTGCCTTCGATGGACCAACGCCGAAAATGCGTCGTTTGCCGAAAGGGTTGTAGCT 960 Query 57984 TTCGCCGCCGTCGAAGGTATATTCTTTT-CGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042 |||||||| ||| || || ||||||| |||| | |||| || | || ||| | || Sbjct 961 TTCGCCGCGTGCGAGGGCATCTTCTTTTCCGGGTCGTTTTG-TGCCGTGTTCTGGTTAAA 1019 Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102 ||| || || ||||||||||| || || ||||||| | || ||||||||||| Sbjct 1020 GAAGCGGGGTTTGATGCCCGGCTTGTGCTTCTCCAACGAGCTCATCAGCCGCGACGAGGG 1079 Query 58103 TCTCCATACTGATTTTGCGTGCCTAATGTAC 58133 | || |||||| |||||| | ||||| Sbjct 1080 CTTGCACTGTGATTTCGCGTGCTTGCTGTAC 1110 >seq6148 Length=2258 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||||||||||||||||||||| || || ||||| || ||| |||| || ||||| Sbjct 1347 AAGATGCAAATTTTCGTAAAGACTCTTACGGGTAAAACCATTACCCTCGATGTGGAACCA 1288 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||||| ||||| || | || |||||||||||| | || || || Sbjct 1287 AGTGACACCATCGAAAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCCCCTGAT 1228 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || ||||| || ||||| || ||||| |||||||| || |||| || || Sbjct 1227 CAACAACGTCTTATCTTCGCCGGAAAACAATTGGAAGATGGCCGCACCTTGAGTGACTAC 1168 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| ||||| ||| | || ||||| |||| ||| Sbjct 1167 AACATCCAAAAGGAAGCCACCCTTCACTTGGTTCTT 1132 >seq229 Length=1895 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||| ||||||||||||||||| ||||| || || ||||| || | ||||| || ||| Sbjct 681 CATACAAATTTTCGTAAAGACCCTGACCGGTAAGACGATTACTTTGGACGTGGAGCCGAG 740 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| ||| | ||||| | | || |||||| ||||| | | |||| | Sbjct 741 CGACACGATCGTGAACGTCAAGCGAAAGATTCAGGACAAAGAAGGTACCCAACACGACAA 800 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| || || ||||| || || ||| |||||||| | ||||||| || || Sbjct 801 ACAGCGGCTGATCTTCGCCGGTAAGCAGCTGGAAGACGGGCGAAACCTGAGCGACTACAA 860 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | |||| |||||| | || || |||||| |||| Sbjct 861 CGTTCAGAAAGAAGCCACGCTGCATCTGCTACT 893 >seq1992 Length=1353 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || ||||||||||||||| ||||| || || || || || || ||| | || || || || Sbjct 1085 AACCATGCAAATTTTCGTCAAGACCCTTACCGGGAAGACCATAACCTTGGATGTCGAGCC 1026 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | || | || || || | || |||||||||||| | || ||||| Sbjct 1025 CTCGGACACGATTGAGAATGTGAAGCAAAAGATTCAAGACAAGGAAGGCATCCCTCCCGA 966 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 || ||||| | || || || || ||||||||||||||| Sbjct 965 TCAACAGCGGTTGATTTTTGCGGGGAAACAGTTGGAAGAC 926 >seq4042 Length=4160 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 31196 CAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGAC 31255 ||||| || ||| ||||| || || || | ||| ||| | ||||| |||||| |||| Sbjct 2403 CAAATGTTTGTAGAGACTT--ACGGG-AAGAGGATTACCCTTGACGTCGAACCGAGCGAC 2459 Query 31256 AGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAG 31315 | |||| | || || || | || ||||||||||||| | || || || || ||| Sbjct 2460 ACGATCGAGAACGTGAAGCAAATGATCCAGGACAAGGAAGGCATTCCCCCGGATCAACAG 2519 Query 31316 CGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATT 31375 ||||| || || || || || ||| |||||||| | || || |||| || ||||| Sbjct 2520 CGTCTTATCTTTGCCGGGAAGCAGCTGGAAGACGGTCGAACCTTGGGCGACTACAACATC 2579 Query 31376 CAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||| | || | |||| || ||| |||| Sbjct 2580 CAGAAAGAGGCCACGTTGAATCTTGTCCTTCGACT 2614 >seq6558 Length=25225 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/234 (68%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 31187 TCAAAC-ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 |||||| ||||| || || || || || |||| || || ||||| ||| | ||||| || Sbjct 2520 TCAAACCATGCAGATATTTGTGAAAACGTTGACGGGGAAGACGATTACCTTGGACGTCGA 2579 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 || || |||| | || | ||||| || | || |||||||||||| | || || Sbjct 2580 GCCCTCGGACACCATTGAGAACGTCAAGCAAAAGATTCAGGACAAGGAAGGGATCCCCCC 2639 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 |||||| || || | || || || || ||||||||||| ||| || | ||| Sbjct 2640 CGACCAACAACGGTTGATTTTTGCGGGGAAACAGTTGGAGGACGGCCGAACGCTCTCCGA 2699 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || |||||||| || || | || || || || || ||| | || |||| || Sbjct 2700 CTACAACATTCAGAAGGAGGCCACCCTCCACCTCGTCCTTCGCCTCCGGGGGGG 2753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445726905096960