Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3919 116 5e-21 >seq3919 Length=4506 Score = 116 bits (128), Expect = 5e-21 Identities = 410/629 (65%), Gaps = 15/629 (2%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| ||| || |||||||| ||||| | |||||||| | || || | |||||||| | Sbjct 1108 ACAGCAAGCACGCGAAATCACAGTGCAAGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGA 1049 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 36269 | | |||||||| | || ||||| || | ||| || | || ||| || || | Sbjct 1048 AGCACAAGCCGGGCATCAAACCCCGCTTCTTTAACCAGAACACGGCACAAAACGACCCGG 989 Query 36270 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT 36329 ||||||| || || || || || || || | || || || || | ||| | | Sbjct 988 AAAAGAAGATGCCCTCGCACGCGGCGAAAGCTACAACCCTTTCGGCAAACGACGCATTTT 929 Query 36330 CAT-GTA--TCCACTTTTGA--GC-CCAATCGGCCTTCTTTTTTACACAAGGCATTGTC- 36382 | || |||| | || || |||||||||||| | || || | || ||| Sbjct 928 CGGCGTTGGTCCA---TCGAAGGCACCAATCGGCCTTTTGGCGGAC-CATGTCAATGTTA 873 Query 36383 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 36442 || || ||||| | | | ||||| || | || ||||| || || ||||| | | Sbjct 872 TCGATGGCATTCAGCAACCTATCCTTTTCTTTTCCATTTTTAATGTACGTGTCAATAAGA 813 Query 36443 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 36502 ||| || | ||| | || |||||||||||||| || || || |||||||| || || Sbjct 812 AGAGAGTATACTTCTGCGTGGATGTTTTCAATGGCTATCTGGAACCCGTAGAAGCACCTT 753 Query 36503 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAA--TTTTCATTCACTATTC 36560 ||||| | | || ||||| || | | | |||| | | | || || || || || | Sbjct 752 GCCTCCGGCAGTTGGACTTC-GTTCGAGA-AGTTCATCAACAGGTTCTCGTTTACAATGC 695 Query 36561 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTA 36620 ||||| |||||| ||||| |||| || | | || || | |||||| || | Sbjct 694 CGTCAGAGGCTGCGAAAAAGGCCAGGACGTTGCTGATGAAGAACCGTTCGTTGTCCGTCA 635 Query 36621 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 36680 ||||| ||| || || | |||| | | |||| |||||| | ||||| || || | Sbjct 634 TTTTATCCCAGTCTTTACTGTCTTGTGCCAAGTCCAGCTCTTCCGCAGTCCAGAACGAGG 575 Query 36681 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATC 36740 | || || ||||| ||||| | ||| || || | | || || || || | ||| |||| Sbjct 574 CTTCAGCTTTTTTGTACATTTGCCAAATATCGTTGTGCTGGATCGGGAACAAAACGAATC 515 Query 36741 TATTTTGATTTTTTGCAAGGATTGGTTCC 36769 || | |||| | || ||||||||| Sbjct 514 GTTTCGGGTTTTCCGTCAGAATTGGTTCC 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658114485889920