Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3675 120 3e-22 seq1992 109 5e-19 seq6558 95.1 1e-14 seq2749 89.7 5e-13 seq229 87.8 2e-12 >seq3675 Length=4586 Score = 120 bits (132), Expect = 3e-22 Identities = 127/165 (77%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 153636 ATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCA 153695 || ||||||||||||||||||||| | ||||| ||||| || || | || |||| Sbjct 1556 ATGGACGCCAAGTTGCAAACGGCAATCTCGTCCGGGGCAGTGTACTGGATGATCTCCGTG 1497 Query 153696 CACAAATTGCTGCATTTTATCAGGCCGCAATTACTT-TGATTGCTTTTGCGGTTACAAGC 153754 ||||| || || |||| || || | ||| | | || |||||||||||||| |||| Sbjct 1496 CACAAGTTACTCGATTTAAT-AGTTCCCAAGTTTTGCTGGTTGCTTTTGCGGTTGCAAGA 1438 Query 153755 GTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTC 153799 ||||||||| |||||||| ||||| |||||||| ||||| |||| Sbjct 1437 GTCCTTGTAGAGCATGTACGGTGTTCCGGTTTCTACTTGACTTTC 1393 >seq1992 Length=1353 Score = 109 bits (120), Expect = 5e-19 Identities = 155/217 (71%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | ||| | |||||| || || || ||||| || |||| |||||| Sbjct 873 ACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCGACAGCGTGCGGCCGTCTTCC 932 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | |||||| || ||| | |||| || || ||||||||||| |||||||| ||||| Sbjct 933 AACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCTTGA 992 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || ||||| || | | || | ||||| | |||||| || || | ||| | ||||| Sbjct 993 ATCTTTTGCTTCACATTCTCAATCGTGTCCGAGGGCTCGACATCCAAGGTTATGGTCTTC 1052 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATAGCTTATG 139772 ||||| | || || ||||| |||||||| | ||||| Sbjct 1053 CCGGTAAGGGTCTTGACGAAAATTTGCAT-GGTTATG 1088 >seq6558 Length=25225 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || |||||||| || ||| | || | ||| || | |||||| || ||| | Sbjct 2718 CTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCCAACTGTTTCCCCGCAAA 2659 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 |||| ||||| || ||||| || || ||||| ||||| || ||||| || | | Sbjct 2658 AATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGAATCTTTTGCTTGACGTT 2599 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | ||||| | |||||| || || | ||| | |||||| || ||||||||||| || Sbjct 2598 CTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTCCCCGTCAACGTTTTCAC 2539 Query 139753 GAATATTTGCAT 139764 ||||| ||||| Sbjct 2538 AAATATCTGCAT 2527 >seq2749 Length=6745 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| |||| ||| | || || || ||||| ||||| |||||| || || | Sbjct 5255 CGCAAGACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGACAAAGTACGGCCA 5196 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || || | ||||| || || || || || || || ||||||||| Sbjct 5195 TCTTCCAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGGGATACCTTCTTTG 5136 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTC--CACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 || ||||||| || | |||| | |||||| | |||||||| | | || | Sbjct 5135 TCCTGGATTTTTCCCTT--GACGTTCATGATCGTGTCGCTAGGCTCCACGTACAAAGTAA 5078 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATA 139757 |||||| |||||||| || || ||||||| Sbjct 5077 TCGTCTTACCGGTCAATGTCTTGACGAATA 5048 >seq229 Length=1895 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 139574 TCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 ||||| |||| ||| || ||||||| | | | |||||| ||||| ||||| || || Sbjct 872 TCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAGCTGCTTACCGGCGAAG 813 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT 139693 ||||| || || | ||| | | | ||||||||||| || ||| | || | | Sbjct 812 ATCAGCCGCTGTTTGTCGTGTTGGGTACCTTCTTTGTCCTGAATCTTTCGCTTGACGTTC 753 Query 139694 TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG 139753 | | |||||| | |||||||| || | || | |||||| ||||||| || |||||| Sbjct 752 ACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTCTTACCGGTCAGGGTCTTTACG 693 Query 139754 AATATTTGCAT 139764 || ||||| || Sbjct 692 AAAATTTGTAT 682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496020048729600