Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3919 154 2e-32 >seq3919 Length=4506 Score = 154 bits (170), Expect = 2e-32 Identities = 589/912 (65%), Gaps = 22/912 (2%) Strand=Plus/Minus Query 49674 GTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCAT 49733 ||| ||||| || || || || |||||||| || ||||||| || ||||| ||||||| Sbjct 1389 GTACTCACCTACCCGCTTCTCAAAAAAATTGGTCTTTCCTTGCAGCGATATCATTTCCAT 1330 Query 49734 GAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCT 49793 |||||||||||||||| | || || || |||| || ||||| | | ||||| Sbjct 1329 CCAATCAAACGGATTGGTTGCGTTGTACATCTTTTCAACCCCCAAGGCCACCAACAATCG 1270 Query 49794 ATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 49853 || ||| | || || ||| ||||| ||||||| ||||| | || || Sbjct 1269 GTCTGCGCAGTACTCGATGTATTCGCACATCAAGGTGGAATTCATCCCTATCAATTCCAC 1210 Query 49854 TGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCT 49913 || | || | | || ||| ||| ||| || || | || ||| Sbjct 1209 GGGCAATGCTTTGGACACGAAAACTTTTTCGATGTCCACAGCGTTCCCGATGATATCGTG 1150 Query 49914 AACGGTTTCTTCACTCGGTGGATGCAATAAATGTT---TAAACATCAAACATGCGAAATC 49970 || | || || | || || | || || | | ||| ||| || |||||||| Sbjct 1149 AATGCGTTGTTGAGGGAGTTTATTTATCAAGTGGTCCTTGTACAGCAAGCACGCGAAATC 1090 Query 49971 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 50030 ||||||| |||||||| | || || || |||||||| || | |||||||| | Sbjct 1089 ACAGTGCAAGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCACAAGCCGGGCATCAA 1030 Query 50031 GCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTAC 50090 || ||||| || | ||| || | || ||| ||||| ||||||||||| || || Sbjct 1029 ACCCCGCTTCTTTAACCAGAACACGGCACAAAACGACCCGGAAAAGAAGATGCCCTCGCA 970 Query 50091 TGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGT-----CATGTATCCACTTT 50145 ||||| || || |||| || || || ||| | ||| | | | |||| | Sbjct 969 CGCGGCGAAAGCTACAACCCTTTCGGCA-AAC-GACGCATTTTCGGCGTTGGTCCA---T 915 Query 50146 TGA--GC-CCAATCGGCCTTCTTTTTTACACAAGGCATCGTT-TCTATGGCATTAAAGAG 50201 || || |||||||||||| | || || | || ||| || |||||||| | | Sbjct 914 CGAAGGCACCAATCGGCCTTTTGGCGGAC-CATGTCAATGTTATCGATGGCATTCAGCAA 856 Query 50202 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 50261 | ||||| || | || ||||| || || || || | |||| || | ||| | Sbjct 855 CCTATCCTTTTCTTTTCCATTTTTAATGTACGTGTCAATAAGAAGAGAGTATACTTCTGC 796 Query 50262 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 50321 || |||||||||||||| ||||| || |||||||| || || ||||| | | || || Sbjct 795 GTGGATGTTTTCAATGGCTATCTGGAACCCGTAGAAGCACCTTGCCTCCGGCAGTTGGAC 736 Query 50322 TTCTGTACAAAATCGTTCAGCTAAA--TTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379 ||| || | | | ||||| | | | || || || || || |||||| |||||| ||| Sbjct 735 TTC-GTTCGAGA-AGTTCATCAACAGGTTCTCGTTTACAATGCCGTCAGAGGCTGCGAAA 678 Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG 50439 || |||| || | | || || ||||||| || | ||||| ||| || || Sbjct 677 AAGGCCAGGACGTTGCTGATGAAGAACCGTTCGTTGTCCGTCATTTTATCCCAGTCTTTA 618 Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499 | |||| | | || | |||||| | ||||| || || || || || ||||| ||| Sbjct 617 CTGTCTTGTGCCAAGTCCAGCTCTTCCGCAGTCCAGAACGAGGCTTCAGCTTTTTTGTAC 558 Query 50500 ATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCA 50559 || | ||| || || | | ||||| ||||| | ||| |||| || || ||| | Sbjct 557 ATTTGCCAAATATCGTTGTGCTGGATCGGGAACAAAACGAATCGTTTCGGGTTTTCCGTC 498 Query 50560 AGGATCGGTTCC 50571 || || |||||| Sbjct 497 AGAATTGGTTCC 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718205161384320