Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3919 120 3e-22 >seq3919 Length=4506 Score = 120 bits (132), Expect = 3e-22 Identities = 257/376 (68%), Gaps = 10/376 (3%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || ||||| |||||||| || | |||||| || | || || || ||||| || || Sbjct 1103 AAGCACGCGAAATCACAGTGCAAGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCAC 1044 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 || || |||||||| || || || |||||||| || | ||| ||| |||||||||||| Sbjct 1043 AAGCCGGGCATCAAACCCCGCTTCTTTAACCAGAACACGGCACAAAACGACCCGGAAAAG 984 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || || ||||| || || || |||| | | ||| ||||||| || |||| | | Sbjct 983 AAGATGCCCTCGCACGCGGCGAAAGCTACAACCCTTTCGGCAAACGACGCATTTTCG-GC 925 Query 14049 GAT-ATCCATTTTCTA--GC-CCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14104 | | |||| || | || ||| || | |||| | | || || | || || Sbjct 924 GTTGGTCCA---TCGAAGGCACCAATCGGCCTTTTGGCGGACCATGTCAATGTTATCGAT 868 Query 14105 AGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCT 14164 ||||| | || ||||| ||||| | || |||||| || |||||||| ||| Sbjct 867 GGCATTCAGCAACCTATCCTTTTCTTTTCCATTTTTAATGTACGTGTCAATAAG-AAGAG 809 Query 14165 A-TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTT 14223 | || | ||| | ||| |||||||| || |||||||| || || || ||||| || || | Sbjct 808 AGTATACTTCTGCGTGGATGTTTTCAATGGCTATCTGGAACCCGTAGAAGCACCTTGCCT 749 Query 14224 CCGACCATTGTACTTC 14239 ||| | ||| ||||| Sbjct 748 CCGGCAGTTGGACTTC 733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479685496099200