Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3919 105 6e-18 >seq3919 Length=4506 Score = 105 bits (116), Expect = 6e-18 Identities = 295/442 (67%), Gaps = 18/442 (4%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || ||||| |||||||| || | |||||| || | || || || ||||| || || Sbjct 1103 AAGCACGCGAAATCACAGTGCAAGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCAC 1044 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 || || |||||||| || || || |||||||| || | ||| || || ||||||||| Sbjct 1043 AAGCCGGGCATCAAACCCCGCTTCTTTAACCAGAACACGGCACAAAACGACCCGGAAAAG 984 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTG--T 13834 || || ||||| || || || |||| | | ||| ||||||| || |||| | Sbjct 983 AAGATGCCCTCGCACGCGGCGAAAGCTACAACCCTTTCGGCAAACGACGCATTTTCGGCG 924 Query 13835 TTGATATCCATTTTCTA--GC-CCATTCAGAtttttttttAATAAAATCCATTGTTTCGA 13891 ||| |||| || | || ||| || | |||| | | || || | |||| Sbjct 923 TTG--GTCCA---TCGAAGGCACCAATCGGCCTTTTGGCGGACCATGTCAATGTTATCGA 869 Query 13892 TTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGC 13951 | ||||| | || ||||| ||||| | || |||||| || |||||||| ||| Sbjct 868 TGGCATTCAGCAACCTATCCTTTTCTTTTCCATTTTTAATGTACGTGTCAATAAG-AAGA 810 Query 13952 TA-TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010 | || | ||| | ||| |||||||| || |||||||| || || || || || || || Sbjct 809 GAGTATACTTCTGCGTGGATGTTTTCAATGGCTATCTGGAACCCGTAGAAGCACCTTGCC 750 Query 14011 TCTGACCATTGTACCTC---CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCA 14067 || | | ||| || || |||| || || | || ||| || || ||||| || Sbjct 749 TCCGGCAGTTGGACTTCGTTCGAG-AAGTTCAT--CAACAGGTTCTCGTTTACAATGCCG 693 Query 14068 TCACTAGCTGCAAAAAATGCCA 14089 ||| ||||| ||||| |||| Sbjct 692 TCAGAGGCTGCGAAAAAGGCCA 671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478546397032320