Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1992 104 2e-17 seq6558 91.5 1e-13 seq2749 91.5 1e-13 >seq1992 Length=1353 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | ||| ||| || || | ||||||||| |||| || || |||| || Sbjct 872 CACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCGACAGCGTGCGGCCGTCTTC 931 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||| ||||| || ||||||||||| ||||||||||||| || | ||||| || || Sbjct 932 CAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCTTG 991 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 ||| | || || | ||| ||||| | |||||| || | ||||| || || Sbjct 992 AATCTTTTGCTTCACATTCTCAATCGTGTCCGAGGGCTCGACATCCAAGGTTATGGTCTT 1051 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || || || ||||||||||| Sbjct 1052 CCCGGTAAGGGTCTTGACGAAAATTTGCAT 1081 >seq6558 Length=25225 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42907 TGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGT 42966 |||| ||| |||||| || | ||||| ||||| | || || |||| ||||| ||| Sbjct 2729 TGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCCAACTGT 2670 Query 42967 TTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAA 43025 || || ||||||||||| || ||||| |||| || | ||||| || || |||| || Sbjct 2669 TTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTC-CTGAATCTT 2611 Query 43026 CTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 | ||||| | ||| ||||| | ||||||||| | || || || || || || Sbjct 2610 TTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTCCCCGT 2551 Query 43086 TAGAGTTTTCACAAAAATTTGCAT 43109 | ||||||||||| || ||||| Sbjct 2550 CAACGTTTTCACAAATATCTGCAT 2527 >seq2749 Length=6745 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | |||||||||||||| ||||| | || |||| || |||||||| ||| Sbjct 5231 TCCTTTTGGATGTTGTAATCGGACAAAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAA 5172 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 |||| ||||||||| || | ||| | ||||||||| || Sbjct 5171 ATCAGTCGCTGTTGGTCAGGCGGGATACCTTCTTTGTC 5134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381336655387104