Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3919 145 1e-29 >seq3919 Length=4506 Score = 145 bits (160), Expect = 1e-29 Identities = 589/912 (65%), Gaps = 22/912 (2%) Strand=Plus/Minus Query 41779 GTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCAT 41838 ||| ||||| || || || || |||||||| |||||||||| || ||||| ||||||| Sbjct 1389 GTACTCACCTACCCGCTTCTCAAAAAAATTGGTCTTTCCTTGCAGCGATATCATTTCCAT 1330 Query 41839 GAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCT 41898 |||||||||||||||| | || || || |||| || ||||| | | ||||| Sbjct 1329 CCAATCAAACGGATTGGTTGCGTTGTACATCTTTTCAACCCCCAAGGCCACCAACAATCG 1270 Query 41899 ATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 41958 |||||| | | || || ||| ||||| ||||||| ||||| | || || Sbjct 1269 GTCTGCGCAGTACTCGATGTATTCGCACATCAAGGTGGAATTCATCCCTATCAATTCCAC 1210 Query 41959 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCT 42018 || | || | | || ||| ||| || || |||| || ||| || Sbjct 1209 GGGCAATGCTTTGGACACGAAAACTTTTTCGATGTCCACAGCGTTCCCGATGATA--TCG 1152 Query 42019 T-ACTGT-TTCTTCACTCGGTGGATACAATAAATGTT---TAAACATCAAACATGCGAAA 42073 | | || || || | || || | || || | | ||| ||| || |||||| Sbjct 1151 TGAATGCGTTGTTGAGGGAGTTTATTTATCAAGTGGTCCTTGTACAGCAAGCACGCGAAA 1092 Query 42074 TCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 42133 || ||||||| ||||| || | || || | |||||||| || | |||||||| Sbjct 1091 TCACAGTGCAAGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCACAAGCCGGGCATC 1032 Query 42134 AGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCT 42193 | || ||||| || | ||| || | | ||| || || ||||||||||| || || Sbjct 1031 AAACCCCGCTTCTTTAACCAGAACACGGCACAAAACGACCCGGAAAAGAAGATGCCCTCG 972 Query 42194 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT-GTA--TCCACTTT 42250 || || || || | || || || || | ||| | || || |||| | Sbjct 971 CACGCGGCGAAAGCTACAACCCTTTCGGCAAACGACGCATTTTCGGCGTTGGTCCA---T 915 Query 42251 TGA--GC-CCAATCGGCCTTCTTTTTTACACAAGGCATCGTT-TCTATGGCATTAAAGAG 42306 || || |||||||||||| | || || | || ||| || |||||||| | | Sbjct 914 CGAAGGCACCAATCGGCCTTTTGGCGGAC-CATGTCAATGTTATCGATGGCATTCAGCAA 856 Query 42307 ATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGA 42366 | ||||| || | || ||||| || || || || | |||| || | ||||| Sbjct 855 CCTATCCTTTTCTTTTCCATTTTTAATGTACGTGTCAATAAGAAGAGAGTATACTTCTGC 796 Query 42367 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTAC 42426 || |||||||||||||| ||||| || |||||||| || || ||||| | | || || Sbjct 795 GTGGATGTTTTCAATGGCTATCTGGAACCCGTAGAAGCACCTTGCCTCCGGCAGTTGGAC 736 Query 42427 TTCTGTACAAAATCGTTCAGCTAAA--TTTTCGTTCACTATTCCGTCACTGGCTGCAAAA 42484 ||| || | | | ||||| | | | || ||||| || || |||||| |||||| ||| Sbjct 735 TTC-GTTCGAGA-AGTTCATCAACAGGTTCTCGTTTACAATGCCGTCAGAGGCTGCGAAA 678 Query 42485 AACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG 42544 || |||| || | | || || | ||||| || | ||||| ||| || || Sbjct 677 AAGGCCAGGACGTTGCTGATGAAGAACCGTTCGTTGTCCGTCATTTTATCCCAGTCTTTA 618 Query 42545 ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATAC 42604 | |||| | | || | ||||| | ||||| || || ||||| || ||||| ||| Sbjct 617 CTGTCTTGTGCCAAGTCCAGCTCTTCCGCAGTCCAGAACGAGGCTTCAGCTTTTTTGTAC 558 Query 42605 ATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGCA 42664 || | ||| ||||| | | || || ||||| | ||| |||| || || ||| | Sbjct 557 ATTTGCCAAATATCGTTGTGCTGGATCGGGAACAAAACGAATCGTTTCGGGTTTTCCGTC 498 Query 42665 AGGATCGGTTCC 42676 || || |||||| Sbjct 497 AGAATTGGTTCC 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671079737066880