Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1992 107 2e-18 seq3675 102 8e-17 seq229 86.0 6e-12 >seq1992 Length=1353 Score = 107 bits (118), Expect = 2e-18 Identities = 144/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 142994 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 143053 ||||| ||||| |||||||| || |||| |||||| | ||||| || ||| | Sbjct 891 TCTTTCTGTATATTGTAATCCGACAGCGTGCGGCCGTCTTCCAACTGTTTCCCCGCAAAA 950 Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113 |||| || || ||||||||||| |||||||| ||||| ||| ||||| || | | Sbjct 951 ATCAACCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGCTTCACATTC 1010 Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173 || | |||||||| ||| || || || | || | ||||| ||||| | || || ||| Sbjct 1011 TCAATCGTGTCCGAGGGCTCGACATCCAAGGTTATGGTCTTCCCGGTAAGGGTCTTGACG 1070 Query 143174 AATATTTGCATAGCTTATG 143192 || |||||||| | ||||| Sbjct 1071 AAAATTTGCAT-GGTTATG 1088 >seq3675 Length=4586 Score = 102 bits (112), Expect = 8e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 157058 ATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCA 157117 || ||||| | || || |||||| | ||||| || || || || | || |||| Sbjct 1556 ATGGACGCCAAGTTGCAAACGGCAATCTCGTCCGGGGCAGTGTACTGGATGATCTCCGTG 1497 Query 157118 CACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCG 157177 ||||| || || |||| || ||| | || || ||||||||||||||||||| | Sbjct 1496 CACAAGTTACTCGATTTAATAGTTCCCAAGTTTTGCTGGTTGCTTTTGCGGTTGCAAGAG 1437 Query 157178 TCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATGTTG 157231 |||||||| | |||||||||||| |||||||| ||||| |||| | ||| ||| Sbjct 1436 TCCTTGTAGAGCATGTACGGTGTTCCGGTTTCTACTTGACTTTCAAGGATTTTG 1383 >seq229 Length=1895 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 142993 TTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATA 143052 |||||| || | |||||| ||||||| | | | |||||| || || ||||| || | Sbjct 873 TTCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAGCTGCTTACCGGCGAA 814 Query 143053 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG 143112 |||||| || || | ||| | | | ||||||||||| ||| ||| | || | | Sbjct 813 GATCAGCCGCTGTTTGTCGTGTTGGGTACCTTCTTTGTCCTGAATCTTTCGCTTGACGTT 754 Query 143113 TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 143172 | | |||||| | || || || || | ||| | |||||| ||||||| || ||||| Sbjct 753 CACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTCTTACCGGTCAGGGTCTTTAC 694 Query 143173 GAATATTTGCAT 143184 ||| ||||| || Sbjct 693 GAAAATTTGTAT 682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506969478524160