Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3919 125 1e-23 seq814 84.2 3e-11 >seq3919 Length=4506 Score = 125 bits (138), Expect = 1e-23 Identities = 378/565 (67%), Gaps = 19/565 (3%) Strand=Plus/Plus Query 125016 GACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGAT 125075 || |||||| ||||||||||||| ||| | ||||| || ||||| | |||||| | || Sbjct 544 GATATTTGGCAAATGTACAAAAAAGCTGAAGCCTCGTTCTGGACTGCGGAAGAGCTGGAC 603 Query 125076 CTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTAT- 125134 || | | ||| | || ||||| | |||| || | || || ||| | Sbjct 604 TTGGCACAAGACAGTAAAGACTGGGATAAAA---TGACGGACAACGAACG---GTTCTTC 657 Query 125135 ATC-GCA-CATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTG 125192 ||| ||| | | ||||||| || || | ||| || || || || ||||| || |||||| Sbjct 658 ATCAGCAACGTCCTGGCCTTTTTCGCAGCCTCTGACGGCATTGTAAACGAGAACCTGTTG 717 Query 125193 ACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAAT 125251 | ||||| | || || | | | || |||| |||||| ||||| ||||| || Sbjct 718 ATGAACTTCTCGAACGAAGTCCAAC-TGCCGGAGGCAAGGTGCTTCTACGGGTTCCAGAT 776 Query 125252 CATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA 125311 ||||| ||| | ||| | ||| | |||||| || ||||||| ||||||| | Sbjct 777 AGCCATTGAAAACATCCACGCAGAAGTATACTCTCTTCTTATTGACACGTACATTAAAAA 836 Query 125312 TCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGACA-CGGTGCCGTCTATACGTAAA 125369 | | || | ||| | | | | | || || ||||| | | || | | | || || Sbjct 837 TG-GAAAAGAAAAGGATAGGTTGCTGAATGCCATCGATAACATTGACATGG-TCCGCCAA 894 Query 125370 AAGGCTCAATGGGTGA-TTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACT 125428 ||||| | || |||| |||| |||| | | | ||| || | |||| ||||| || | Sbjct 895 AAGGC-CGATTGGTGCCTTCGATGGACCAACGCCGAAAATGCGTCGTTTGCCGAAAGGGT 953 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTAGTTTTGCGGCCATCTTTT 125487 || || |||||||| |||||||||||||||| ||||| |||||| ||| | || | Sbjct 954 TGTAGCTTTCGCCGCGTGCGAGGGCATCTTCTTTTCCGGGTCGTTTTG-TGCCGTGTTCT 1012 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 || | |||||||| || | |||||||| || | |||||| | || || | Sbjct 1013 GGTTAAAGAAGCGGGGTTTGATGCCCGGCTTGTGCTTCTCCAACGAGCTCATCAGCCGCG 1072 Query 125548 ACGAGGGCCTACACTGTGACTTTGC 125572 |||||||| | |||||||| || || Sbjct 1073 ACGAGGGCTTGCACTGTGATTTCGC 1097 >seq814 Length=10616 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 |||||||||||| || | ||| ||||| || || | ||| | ||||||||| || || || Sbjct 362 TTTGCGGTAAAATATCATTCCCGCTCGTGGGCCACGGAGGGACTTGTGCGTGGTCGTCGT 421 Query 127161 CACAATGTCACAATACTCAAAGGGGC 127186 ||||||||||||| | ||||| |||| Sbjct 422 CACAATGTCACAAAATTCAAACGGGC 447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740993542154880