Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6148 127 1e-24 seq229 102 6e-17 seq6558 91.5 1e-13 >seq6148 Length=2258 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||||| || ||||| |||||||| || || | | | | ||||| Sbjct 1135 AACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCATCTTC 1194 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||| || ||| | || | ||||||||| || || || ||||| ||||| Sbjct 1195 CAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGGATACCTTCCTTGTCCTG 1254 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || |||| ||||| || || ||| ||||| | |||||||||||| Sbjct 1255 GATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACATCGAGGGTAATGGTTTT 1314 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| || ||||| ||||| ||||||||||| || Sbjct 1315 ACCCGTAAGAGTCTTTACGAAAATTTGCATCTT 1347 >seq229 Length=1895 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || |||| ||||| || | |||||| ||||| || ||| | ||||||| | || Sbjct 885 ATGCAGCGTGGCTTCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAGCTG 826 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | |||| || |||| ||||| | | | ||||||||||| ||| || Sbjct 825 CTTACCGGCGAAGATCAGCCGCTGTTTGTCGTGTTGGGTACCTTCTTTGTCCTGAATCTT 766 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | | || || ||||| || || || || ||||| || ||||| || Sbjct 765 TCGCTTGACGTTCACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTCTTACCGGT 706 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||| || ||||| |||||||| || Sbjct 705 CAGGGTCTTTACGAAAATTTGTAT 682 >seq6558 Length=25225 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||||| || || || |||||||| ||| || ||| |||| || || ||| Sbjct 2729 TGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCCAACTGT 2670 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | ||||| |||||||||||| || || ||||| ||||| ||| || Sbjct 2669 TTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGAATCTTT 2610 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || ||||| || || || || |||||||| || || || ||| Sbjct 2609 TGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTTCCCCGTC 2550 Query 15341 AGAGTTTTTACAAAAATTTGCAT-ATTTGAAA 15371 | ||||| ||||| || ||||| ||||||| Sbjct 2549 AACGTTTTCACAAATATCTGCATGGTTTGAAA 2518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362147913149808