Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6148 122 2e-22 seq6558 116 9e-21 seq229 95.1 3e-14 seq1888 87.8 4e-12 >seq6148 Length=2258 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104368 TTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 104427 ||| || || || || |||||| | || | || ||||| | ||||||||| || || Sbjct 1153 TTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCATCTTCCAATTGTTTTCCGGCGAA 1212 Query 104428 AATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATT 104487 || || | ||||||||||| || || ||||| || ||||| |||||| || || || Sbjct 1213 GATAAGACGTTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTT 1272 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 ||| | ||| || || ||||| || || || ||||| || ||||| ||||| || ||||| Sbjct 1273 TTCGATGGTGTCACTTGGTTCCACATCGAGGGTAATGGTTTTACCCGTAAGAGTCTTTAC 1332 Query 104548 AAATATCTGCATTTTGT 104564 || || ||||| |||| Sbjct 1333 GAAAATTTGCATCTTGT 1349 >seq6558 Length=25225 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 ||||| | || | ||| || || || | || | || |||||||| || ||||| || Sbjct 2753 CCCCCCCGGAGGCGAAGGACGAGGTGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAG 2694 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || |||| ||||| || | ||||| || |||||||| | || ||||| || || || Sbjct 2693 AGCGTTCGGCCGTCCTCCAACTGTTTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGG 2634 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || |||||||||||| || || || || | ||| || || || || Sbjct 2633 ATCCCTTCCTTGTCCTGAATCTTTTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACG 2574 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | ||||| ||||| || || | ||||| |||||||||||||| Sbjct 2573 TCCAAGGTAATCGTCTTCCCCGTCAACGTTTTCACAAATATCTGCAT 2527 >seq229 Length=1895 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 |||| ||||| | || | ||||||||||| || ||||| || ||| |||||| Sbjct 893 AGTAGCAGATGCAGCGTGGCTTCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCT 834 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || |||| ||||| || | | | |||||||| ||| Sbjct 833 TCCAGCTGCTTACCGGCGAAGATCAGCCGCTGTTTGTCGTGTTGGGTACCTTCTTTGTCC 774 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||||||| || || || | | || ||||| || || || || | ||||| ||| Sbjct 773 TGAATCTTTCGCTTGACGTTCACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTC 714 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || Sbjct 713 TTACCGGTCAGGGTCTTTACGAAAATTTGTAT 682 >seq1888 Length=501 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 || || || | |||||||||||| || || ||||| || ||||| |||||| || || Sbjct 2 AAGATAAGACGCTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGACG 61 Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTT 104545 || || | |||||| || || || || || || || || || ||||| || | |||||| Sbjct 62 TTCTCGATGGTATCACTTGGCTCCACATCGAGCGTGATGGTTTTACCCGTCAACGTTTTT 121 Query 104546 ACAAATATCTGCATTTTG 104563 || || || ||||| ||| Sbjct 122 ACGAAAATTTGCATATTG 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151293835754304